| add.diallel.vars | add.diallel.vars |
| adjBeta | Adjusting fixed effects for intercept |
| A.mat | Additive relationship matrix |
| atcg1234 | Letter to number converter |
| balanceData | Balance a dataset |
| bbasis | Function for creating B-spline basis functions (Eilers &... |
| build.HMM | Build a hybrid marker matrix using parental genotypes from... |
| Dtable | Get the hypertable for predictions |
| DT_augment | DT_augment design example. |
| DT_big | Big GxE Quantitative Genetic Simulation |
| DT_btdata | Blue Tit Data for a Quantitative Genetic Experiment |
| DT_cornhybrids | Corn crosses and markers |
| DT_cpdata | Genotypic and Phenotypic data for a CP population |
| DT_example | Broad sense heritability calculation. |
| DT_expdesigns | Data for different experimental designs |
| DT_fulldiallel | Full diallel data for corn hybrids |
| DT_gryphon | Gryphon data from the Journal of Animal Ecology |
| DT_h2 | Broad sense heritability calculation. |
| DT_halfdiallel | half diallel data for corn hybrids |
| DT_ige | Data to fit indirect genetic effects. |
| DT_legendre | Simulated data for random regression |
| DT_mohring | Full diallel data for corn hybrids |
| DT_polyploid | Genotypic and Phenotypic data for a potato polyploid... |
| DT_rice | Rice lines dataset |
| DT_sleepstudy | Reaction times in a sleep deprivation study |
| DT_technow | Genotypic and Phenotypic data from single cross hybrids... |
| DT_wheat | wheat lines dataset |
| DT_yatesoats | Yield of oats in a split-block experiment |
| getCi | Get the inverse coefficient matrix |
| getMME | Build the mixed model equations from a lmebreed object |
| I.mat | Identity relationship matrix |
| impute | Imputing a numeric or character vector |
| leg | Legendre polynomial matrix |
| lme4breeding-package | *L*inear *m*ixed *e*quations *4* *B*reeding |
| lmebreed | Fit breeding-related mixed-effects models |
| lmebreed-class | Relationship-based mixed-effects model fits |
| mkMmeIndex | Table to track effects |
| overlay | Overlay Matrix |
| redmm | Reduced Model Matrix |
| rrm | reduced rank matrix |
| simage | Image of sparsity between two variables |
| simage2 | Shortcut to sparse matrix image |
| smm | sparse model matrix |
| tps | Get Tensor Product Spline Mixed Model Incidence Matrices |
| umat | Rotation matrix UDU' decomposition |
