lmf: Functions for estimation and inference of selection in age-structured populations

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This R package provide methods for estimation and statistical inference on directional and fluctuating selection in age-structured populations.

Author
Thomas Kvalnes
Date of publication
2013-10-31 16:32:03
Maintainer
Thomas Kvalnes <thomas.kvalnes@ntnu.no>
License
GPL-2
Version
1.2

View on CRAN

Man pages

atCfn
Calculate corrected temporal mean coefficients of selection
boot.lmf
Bootstrap resampling for class "lmf"
ci.boot.lmf
Confidence intervals for class "boot.lmf"
eigenl
Calculating lambda, u and v
fs
Estimate temporal coefficients of selection
inv
Calculate the inverse of a matrix
lm.extract
Extract linear regression components
lmf
Fitting age-structured selection model
lmf-package
Functions for estimation and inference of selection in...
lnL.M
Maximum likelihood function for temporal coefficients of...
nearPD
Find nearest positive definite matrix
nfs
Estimate temporal coefficients of selection assuming no...
plot.boot.lmf
Plotting function for class "boot.lmf"
plot.lmf
Plot diagnostics for an lmf object
projection
The projection matrix
rmnorm
Generate random numbers from the multivariate normal...
se
Standard error
sparrowdata
House Sparrow data set
summary.boot.lmf
Summarizing bootstraps of lmf fits
summary.lmf
Summarizing lmf fits

Files in this package

lmf
lmf/NAMESPACE
lmf/data
lmf/data/sparrowdata.rda
lmf/R
lmf/R/lmf.R
lmf/R/nfs.R
lmf/R/print.ci.boot.lmf.R
lmf/R/boot.lmf.R
lmf/R/plot.lmf.R
lmf/R/eigenl.R
lmf/R/summary.lmf.R
lmf/R/rmnorm.R
lmf/R/procomp.R
lmf/R/inv.R
lmf/R/se.R
lmf/R/lm.extract.R
lmf/R/fs.R
lmf/R/ci.boot.lmf.R
lmf/R/lmf-internal.R
lmf/R/plot.boot.lmf.R
lmf/R/print.summary.boot.lmf.R
lmf/R/atCfn.R
lmf/R/lnL.M.R
lmf/R/print.boot.lmf.R
lmf/R/nearPD.R
lmf/R/summary.boot.lmf.R
lmf/R/print.summary.lmf.R
lmf/R/promat.R
lmf/R/print.lmf.R
lmf/MD5
lmf/DESCRIPTION
lmf/man
lmf/man/nfs.Rd
lmf/man/plot.boot.lmf.Rd
lmf/man/lmf-package.Rd
lmf/man/rmnorm.Rd
lmf/man/plot.lmf.Rd
lmf/man/nearPD.Rd
lmf/man/projection.Rd
lmf/man/summary.lmf.Rd
lmf/man/lmf.Rd
lmf/man/se.Rd
lmf/man/fs.Rd
lmf/man/boot.lmf.Rd
lmf/man/summary.boot.lmf.Rd
lmf/man/sparrowdata.Rd
lmf/man/eigenl.Rd
lmf/man/lnL.M.Rd
lmf/man/inv.Rd
lmf/man/ci.boot.lmf.Rd
lmf/man/atCfn.Rd
lmf/man/lm.extract.Rd