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## ----setup, include=FALSE-----------------------------------------------------
knitr::opts_chunk$set(
warning = FALSE,
message = FALSE,
fig.width = 7.252,
fig.height = 4,
comment = "#>",
fig.retina = 3
)
## -----------------------------------------------------------------------------
library(logitr)
library(dplyr)
library(tidyr)
library(kableExtra) # For tables
numDraws <- unique(runtimes$numDraws)
logitr_time <- runtimes %>%
filter(package == "logitr") %>%
rename(time_logitr = time_sec)
time_compare <- runtimes %>%
left_join(select(logitr_time, -package), by = "numDraws") %>%
mutate(mult = round(time_sec/ time_logitr, 1)) %>%
select(-time_logitr)
# Compare raw times
time_compare %>%
select(-mult) %>%
pivot_wider(names_from = numDraws, values_from = time_sec) %>%
kbl()
# Compare how many times slower compared to logitr
time_compare %>%
select(-time_sec) %>%
pivot_wider(names_from = numDraws, values_from = mult) %>%
kbl()
## ----eval=FALSE---------------------------------------------------------------
# library(ggplot2)
# library(ggrepel)
#
# plotColors <- c("black", RColorBrewer::brewer.pal(n = 5, name = "Set1"), "gold")
# benchmark <- runtimes %>%
# ggplot(aes(x = numDraws, y = time_sec, color = package)) +
# geom_line() +
# geom_point() +
# geom_text_repel(
# data = . %>% filter(numDraws == max(numDraws)),
# aes(label = package),
# hjust = 0, nudge_x = 40, direction = "y",
# size = 4.5, segment.size = 0
# ) +
# scale_x_continuous(
# limits = c(0, 1200),
# breaks = numDraws,
# labels = scales::comma) +
# scale_y_continuous(limits = c(0, 300), breaks = seq(0, 300, 100)) +
# scale_color_manual(values = plotColors) +
# guides(
# point = guide_legend(override.aes = list(label = "")),
# color = guide_legend(override.aes = list(label = ""))) +
# theme_bw(base_size = 18) +
# theme(
# panel.grid.minor = element_blank(),
# panel.grid.major.x = element_blank(),
# legend.position = "none",
# axis.line.x = element_blank(),
# axis.ticks.x = element_blank()
# ) +
# labs(
# x = "Number of random draws",
# y = "Computation time (seconds)"
# )
#
# benchmark
## ----eval=FALSE, echo=FALSE---------------------------------------------------
# ggsave('benchmark.png', benchmark, width = 8.5, height = 6)
## ----probabilities, echo=FALSE------------------------------------------------
knitr::include_graphics('benchmark.png')
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