Man pages for loose.rock
Tools for Survival Analysis and Data Science
| balanced.cv.folds | Create balanced folds for cross validation |
| balanced.cv.folds.from.vector | Create balanced folds for cross validation |
| balanced.train.and.test | Get a balanced test and train dataset |
| balanced.train.and.test.from.vector | Get a balanced test and train dataset |
| base.dir | change base.dir for run.cache |
| build.function.digest | Build digest of function from the actual code |
| cache.compression | change cache.compression for run.cache |
| calculate.result | Calculate/load result and save if necessary |
| ccds.genes.internal | Download coding genes from CCDS |
| coding.genes | Retrive coding genes from known databases |
| coding.genes.ensembl | Ensembl coding genes, local function |
| create.directory.for.cache | Create directories for cache |
| curl.workaround | Workaround for bug with curl when fetching specific ensembl... |
| digest.cache | Default digest method |
| draw.cov.matrix | Plot covariance heatmap from matrix |
| gen.synth.xdata | Generate xdata matrix with pre-determined covariance |
| getBM.internal | Internal call to biomaRt::getBM |
| getHsapiensMart.internal | Get hsapiens mart from biomaRt |
| join.ensembl.and.ccds | Join genes from ensembl and ccds in a single table |
| listEnsemblMirrors | Internal function to list mirrors |
| loose.rock | loose.rock: compilation of data science functions |
| loose.rock.options | Constants for 'loose.rock' package |
| multiplot | Multiple plot |
| my.colors | Custom pallete of colors |
| my.symbols | Custom pallete of symbols in plots |
| proper | Capitalizes all words in string |
| release_questions | Questions to ask when calling devtools::release() |
| run.cache | Run function and save cache |
| run.cache-function-method | Run function and save cache |
| save.run.cache | Saving the cache |
| search.genes.internal | Search genes in biomaRt |
| show.message | Show messages option in run.cache |
| tempdir.cache | Temporary directory for runCache |
| write.readme | Write a file in run-cache directory to explain the origin |
