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#' Predictions from an \code{lqr} object
#'
#' Returns the predicted values for an object of \code{\link{class}} \code{\link{lqr}}.
#'
#' @param object an \code{lqr} object
#' @param newdata an optional data frame in which to look for variables with which to predict. If omitted, the fitted values are produced
#' @param \dots not used
#'
#' @details
#' The function computes predictions for an object of \code{\link{class}} \code{\link{lqr}}.
#'
#' @return A vector of predictions.
#'
#' @export
predict.lqr = function (object, newdata = NULL, ...){
qtl = object$qtl
formula = object$formula
betaf = object$betaf
if(!is.null(newdata)){
if (!inherits(newdata, "data.frame"))
stop("'newdata' must be a data frame")
if (!all(all.vars(formula) %in% names(newdata)))
stop("newdata must have all terms in the formula from main call")
nObs = dim(newdata)[1]
rown = rownames(newdata)
# build design matrices
xy = xyBuildHOM(formula=formula, data=newdata)
y.obs = xy$y.obs; x.fixed = xy$x.fixed
}else{
nObs = object$nobs
x.fixed = object$mmf
rown = rownames(object$mmf)
}
linear.predictor = c(x.fixed %*% betaf)
names(linear.predictor) = rown
return(linear.predictor)
}
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