print.markophylo: Print summary information for the model fit.

In markophylo: Markov Chain Models for Phylogenetic Trees

Print summary information for the model fit.

Description

Summary command for use on an object of class "markophylo". The estimated substitution rates for each partition specified along with the estimated \alpha(s) for the gamma distribution (if any) and prior probability of discrete characters at the root (if estimated) are printed. If branch groupings (or clades) were specified, then the rates (and corresponding standard errors) are displayed in a matrix with the columns representing the different branch groupings (ordered by the subsets of x$bg where x is an object of class "idea"). The rows represent the indices of the model matrix.

Usage

## S3 method for class 'markophylo'
print(x, ...)

Arguments

x	An object of class "markophylo".
...	Ignore this

Value

Printing function

Author(s)

Utkarsh J. Dang and G. Brian Golding

[e-mail]

See Also

See also estimaterates.

markophylo documentation built on Sept. 19, 2023, 5:06 p.m.