simdata1: Simulated data.

In markophylo: Markov Chain Models for Phylogenetic Trees

Simulated data.

Description

Five simulated data sets are included.

Usage

data("simdata1")
data("simdata2")
data("simdata3")
data("simdata4")
data("simdata5")

Format

Each data set contains a list that comprises a tree (called "tree") and data (called "data") as its components. The tree is in the ape package phylo format. The data component consists of a matrix of discrete character patterns with the different patterns as the rows and the taxa as the columns.

Details

These data were simulated with either the geiger or the phangorn packages.

Value

Simulated datasets. See examples

References

Schliep K.P. 2011. phangorn: phylogenetic analysis in R. Bioinformatics, 27(4) 592–593. R package version 1.99-12.

Harmon Luke J, Jason T Weir, Chad D Brock, Richard E Glor, and Wendell Challenger. 2008. GEIGER: investigating evolutionary radiations. Bioinformatics 24:129-131. R package version 2.0.3.

Examples

data(simdata1)
data(simdata2)
data(simdata3)
data(simdata4)
data(simdata5)

markophylo documentation built on Sept. 19, 2023, 5:06 p.m.