get_counts: Get transition pattern counts from MarkovFit object

In markovmix: Mixture of Markov Chains with Support of Higher Orders and Multiple Sequences

Get transition pattern counts from MarkovFit object

Description

get_counts gets transition pattern counts from MarkovMix object.

Usage

get_counts(object, check = TRUE)

Arguments

object	MarkovMix object.
check	Logical (1L) indicating whether to check object at the beginning.

Value

A numeric matrix indicates transition pattern (soft) counts, where each row corresponds to a transition pattern and each column corresponds to a component.

Note

Change log:

• 0.1.2 Xiurui Zhu - Initiate the function.

Author(s)

Xiurui Zhu

See Also

Other MarkovMix utilities: Extract.MarkovMix, get_order(), get_prior(), get_prob(), get_states_mat(), get_states(), restate()

Examples

# Load example MarkovMix object
data("markov_mix_ex")

# Derive transition pattern soft counts
get_counts(object = markov_mix_ex)

# Derive the order of Markov chains
get_order(object = markov_mix_ex)

# Derive the states of Markov chains
get_states(object = markov_mix_ex)

# Derive state transition patterns
get_states_mat(markov_mix_ex)

# Derive probability matrices
get_prob(markov_mix_ex)

# Derive component priors
get_prior(markov_mix_ex)

# Combine state transition patterns and their probabilities
cbind(
  as.data.frame(get_states_mat(markov_mix_ex)),
  as.data.frame(get_prob(markov_mix_ex))
)

# Extract 1 or more components
markov_mix_ex[2L]
markov_mix_ex[c(1L, 3L)]

# Replace 1 or more components
nrow_value <- length(get_states(object = markov_mix_ex, check = FALSE))^
  (get_order(object = markov_mix_ex, check = FALSE) + 1L)
markov_mix_ex2 <- markov_mix_ex
markov_mix_ex2[2L] <- runif(nrow_value)
print(markov_mix_ex2)
markov_mix_ex3 <- markov_mix_ex
markov_mix_ex3[c(1L, 3L)] <- matrix(runif(nrow_value * 2L), ncol = 2L)
print(markov_mix_ex3)

markovmix documentation built on May 29, 2024, 10:41 a.m.