A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.
|Date of publication||2016-01-12 00:26:03|
|Maintainer||Peter Solymos <firstname.lastname@example.org>|
aggregate.mefa: Extract and Aggregate Objects of Class 'mefa'
aoplot: Abundance-Occupancy Plot
as.mefa: Conversion Among Various Object Classes
dolina: The Dolina Dataset
fill.na: Replace <NA> Values with Nearest Above Values
image.dist: Image Plot of a 'dist' Object
label: Assign Label to an Object and Return It
mat2list: Matrix Manipulation Tools
mefa: Create an Object of Class 'mefa'
mefaCheck: Check and Compare Object(s) of Class 'mefa'
mefaCrosstab: Cross Tabulate an Object of Class 'stcs'
mefadocs: Display Package Documentation
mefalogo: Schematic Plot of an Object of Class 'mefa'
mefaNestedless: Make Non-Nested 'mefa' Object
mefaTables: Subsetting and Ordering of Related Data Tables
mefaweb: Open 'mefa' Website
melt.mefa: Melt (Convert) an Object of Class 'mefa' Into 'stcs'
plot.mefa: Plotting Methods for Object of Class 'mefa' and 'stcs'
qvector: Ordinal Transformation of a Vector
rep.data.frame: Inflate (repeat) a Data Frame
report.mefa: Write Report of an Object of Class 'mefa' into File
stack.dist: Manipulation Tools for Class 'dist'
stcs: Create an Object of Class 'stcs'