mefa: Multivariate Data Handling in Ecology and Biogeography
Version 3.2-7

A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.

AuthorPeter Solymos
Date of publication2016-01-12 00:26:03
MaintainerPeter Solymos <solymos@ualberta.ca>
LicenseGPL-2
Version3.2-7
URL https://github.com/psolymos/mefa
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("mefa")

Popular man pages

dolina: The Dolina Dataset
fill.na: Replace <NA> Values with Nearest Above Values
image.dist: Image Plot of a 'dist' Object
mefa: Create an Object of Class 'mefa'
mefadocs: Display Package Documentation
mefalogo: Schematic Plot of an Object of Class 'mefa'
mefaTables: Subsetting and Ordering of Related Data Tables
See all...

All man pages Function index File listing

Man pages

aggregate.mefa: Extract and Aggregate Objects of Class 'mefa'
aoplot: Abundance-Occupancy Plot
as.mefa: Conversion Among Various Object Classes
dolina: The Dolina Dataset
fill.na: Replace <NA> Values with Nearest Above Values
image.dist: Image Plot of a 'dist' Object
label: Assign Label to an Object and Return It
mat2list: Matrix Manipulation Tools
mefa: Create an Object of Class 'mefa'
mefaCheck: Check and Compare Object(s) of Class 'mefa'
mefaCrosstab: Cross Tabulate an Object of Class 'stcs'
mefadocs: Display Package Documentation
mefalogo: Schematic Plot of an Object of Class 'mefa'
mefaNestedless: Make Non-Nested 'mefa' Object
mefaTables: Subsetting and Ordering of Related Data Tables
mefaweb: Open 'mefa' Website
melt.mefa: Melt (Convert) an Object of Class 'mefa' Into 'stcs'
plot.mefa: Plotting Methods for Object of Class 'mefa' and 'stcs'
qvector: Ordinal Transformation of a Vector
rep.data.frame: Inflate (repeat) a Data Frame
report.mefa: Write Report of an Object of Class 'mefa' into File
stack.dist: Manipulation Tools for Class 'dist'
stcs: Create an Object of Class 'stcs'

Functions

[.mefa Man page
aggregate.mefa Man page
aoplot Man page Source code
aoplot.default Man page Source code
as.Mefa Man page Source code
as.Mefa.mefa Source code
as.Mefa.stcs Source code
as.Xtab Man page Source code
as.Xtab.mefa Source code
as.Xtab.stcs Source code
as.array.mefa Man page
as.data.frame.mefa Man page Source code
as.data.frame.stcs Man page
as.list.mefa Man page
as.matrix.mefa Man page
as.mefa Man page
as.mefa.Mefa Source code
as.mefa.array Man page
as.mefa.default Man page
as.mefa.list Man page
as.mefa.sparseMatrix Source code
as.stcs Man page
as.stcs.Mefa Source code
as.stcs.default Man page
as.stcs.sparseMatrix Source code
boxplot.mefa Man page
boxplot.stcs Man page
cdrop Man page Source code
dim.mefa Man page
dimnames.mefa Man page
dol.count Man page
dol.samp Man page
dol.taxa Man page
fill.na Man page
image.dist Man page Source code
image.mefa Man page
image.stcs Man page
is.dist Man page Source code
is.mefa Man page
is.stcs Man page
label Man page Source code
label<- Man page
mat2list Man page Source code
mefa Man page
mefa-package Man page
mefaCheck Man page
mefaCompare Man page
mefaCrosstab Man page
mefaNestedless Man page
mefaTables Man page
mefadocs Man page
mefalogo Man page
mefaweb Man page Source code
melt Man page
melt.mefa Man page
mfill Man page Source code
msr Man page Source code
mss Man page Source code
mtr Man page Source code
mts Man page Source code
onAttach Source code
onUnload Source code
plot.mefa Man page
plot.stcs Man page
print.mefa Man page
print.summary.mefa Man page
qvector Man page
rdrop Man page Source code
rep.data.frame Man page
report Man page
report.mefa Man page
samp Man page Source code
samp.default Source code
segm Man page Source code
segm.default Source code
stack.dist Man page Source code
stcs Man page
summary.mefa Man page
summary.stcs Man page
taxa Man page Source code
taxa.default Source code
vec2dist Man page Source code
xtab Man page Source code
xtab.default Source code

Files

inst
inst/CITATION
inst/ChangeLog
inst/doc
inst/doc/mefa.Rnw
inst/doc/mefa.pdf
inst/doc/mefa.R
inst/SampleReport
tests
tests/tests.R
NAMESPACE
demo
demo/00Index
demo/mefa.R
data
data/dol.taxa.rda
data/dol.samp.rda
data/dol.count.rda
R
R/as.list.mefa.R
R/msr.R
R/stack.dist.R
R/summary.stcs.R
R/taxa.R
R/as.mefa.default.R
R/mefaNestedless.R
R/print.mefa.R
R/is.dist.R
R/is.stcs.R
R/plot.mefa.R
R/as.stcs.R
R/fill.na.R
R/mss.R
R/rep.data.frame.R
R/as.matrix.mefa.R
R/report.R
R/mfill.R
R/plot.stcs.R
R/as.data.frame.stcs.R
R/label.R
R/report.mefa.R
R/rdrop.R
R/mefaCheck.R
R/summary.mefa.R
R/aggregate.mefa.R
R/melt.mefa.R
R/as.array.mefa.R
R/print.summary.mefa.R
R/aoplot.default.R
R/xtab.default.R
R/cdrop.R
R/mefalogo.R
R/as.mefa.list.R
R/taxa.default.R
R/mefadocs.R
R/image.stcs.R
R/stcs.R
R/mat2list.R
R/dimnames.mefa.R
R/mefaweb.R
R/melt.R
R/mts.R
R/segm.default.R
R/segm.R
R/mefaTables.R
R/samp.R
R/image.mefa.R
R/coercionMethodsForMefa4.R
R/mtr.R
R/aoplot.R
R/xtab.R
R/image.dist.R
R/is.mefa.R
R/vec2dist.R
R/as.mefa.array.R
R/boxplot.stcs.R
R/dim.mefa.R
R/mefaCrosstab.R
R/boxplot.mefa.R
R/qvector.R
R/mefaCompare.R
R/samp.default.R
R/mefa.R
R/zzz.R
R/as.mefa.R
R/as.data.frame.mefa.R
R/extract.mefa.R
R/as.stcs.default.R
vignettes
vignettes/mefa.Rnw
vignettes/mefa.bib
MD5
build
build/vignette.rds
DESCRIPTION
man
man/mefaCheck.Rd
man/report.mefa.Rd
man/plot.mefa.Rd
man/mefaNestedless.Rd
man/mat2list.Rd
man/aoplot.Rd
man/mefaweb.Rd
man/aggregate.mefa.Rd
man/dolina.Rd
man/mefaTables.Rd
man/stcs.Rd
man/fill.na.Rd
man/rep.data.frame.Rd
man/stack.dist.Rd
man/mefa.Rd
man/melt.mefa.Rd
man/qvector.Rd
man/label.Rd
man/mefaCrosstab.Rd
man/mefadocs.Rd
man/as.mefa.Rd
man/image.dist.Rd
man/mefalogo.Rd
mefa documentation built on May 20, 2017, 12:33 a.m.