tree_fish_12k: Mega-tree of 11638 Fish from The Fish Tree of Life
In megatrees: Subsets of Randomly Selected Phylogenies from Existing Mega-Phylogenies
tree_fish_12k R Documentation
Mega-tree of 11638 Fish from The Fish Tree of Life
Description
This tree was generated by Rabosky et al. (2018). It has 11638 tips that all have sequence data. Node labels were added here.
Usage
tree_fish_12k
Format
A phylogeny with class "phylo". It is also a list. Compare with a normal phylo object, it has another data frame 'tree_fish_12k$genus_family_root', which provides the root nodes information for every unique genus and family in the phylogeny. Such information can be used to insert new tips onto the phylogeny later.
Source
https://fishtreeoflife.org/downloads/actinopt_12k_treePL.tre.xz
References
Rabosky, D. L., Chang, J., Title, P. O., Cowman, P. F., Sallan, L., Friedman, M., ... & Alfaro, M. E. (2018). An inverse latitudinal gradient in speciation rate for marine fishes. Nature, 559(7714), 392.
See Also
tree_fish_32k_n50
megatrees documentation built on May 22, 2026, 5:07 p.m.
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| tree_fish_12k | R Documentation |
Mega-tree of 11638 Fish from The Fish Tree of Life
Description
This tree was generated by Rabosky et al. (2018). It has 11638 tips that all have sequence data. Node labels were added here.
Usage
tree_fish_12k
Format
A phylogeny with class "phylo". It is also a list. Compare with a normal phylo object, it has another data frame 'tree_fish_12k$genus_family_root', which provides the root nodes information for every unique genus and family in the phylogeny. Such information can be used to insert new tips onto the phylogeny later.
Source
https://fishtreeoflife.org/downloads/actinopt_12k_treePL.tre.xz
References
Rabosky, D. L., Chang, J., Title, P. O., Cowman, P. F., Sallan, L., Friedman, M., ... & Alfaro, M. E. (2018). An inverse latitudinal gradient in speciation rate for marine fishes. Nature, 559(7714), 392.
See Also
tree_fish_32k_n50
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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