metacom: Analysis of the 'Elements of Metacommunity Structure'

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Functions to analyze coherence, boundary clumping, and turnover following the pattern-based metacommunity analysis of Leibold and Mikkelson 2002. The package also includes functions to visualize ecological networks, and to calculate modularity as a replacement to boundary clumping.

Author
Tad Dallas
Date of publication
2016-04-13 21:35:15
Maintainer
Tad Dallas <tdallas@uga.edu>
License
GPL-2
Version
1.4.4
URLs

View on CRAN

Man pages

BoundaryClump
Determines boundary clumping
Coherence
Determines coherence
IdentifyStructure
Classifies metacommunities
Imagine
Plotting of site-by-species interaction matrices
Metacommunity
Analysis of the Elements of Metacommunity Structure
metacom-package
Pattern-based analysis of metacommunity structure
Modularity
Calculates Barber's Bipartite Modularity
NullMaker
Null matrix creator
OrderMatrix
Ordinates interaction matrix
TestMatrices
Test matrices used to evaluate metacommunity functions
Turnover
Determines species turnover

Files in this package

metacom
metacom/tests
metacom/tests/testthat.R
metacom/tests/testthat
metacom/tests/testthat/test-Modularity.R
metacom/tests/testthat/test-Metacommunity.R
metacom/NAMESPACE
metacom/data
metacom/data/TestMatrices.rda
metacom/R
metacom/R/Turnover.R
metacom/R/Coherence.R
metacom/R/OrderMatrix.R
metacom/R/Imagine.R
metacom/R/IdentifyStructure.R
metacom/R/metacom-package.R
metacom/R/Modularity.R
metacom/R/Metacommunity.R
metacom/R/BoundaryClump.R
metacom/R/NullMaker.R
metacom/MD5
metacom/DESCRIPTION
metacom/man
metacom/man/Turnover.Rd
metacom/man/Metacommunity.Rd
metacom/man/Modularity.Rd
metacom/man/Imagine.Rd
metacom/man/OrderMatrix.Rd
metacom/man/TestMatrices.Rd
metacom/man/metacom-package.Rd
metacom/man/IdentifyStructure.Rd
metacom/man/Coherence.Rd
metacom/man/NullMaker.Rd
metacom/man/BoundaryClump.Rd