TestMatrices: Test matrices used to evaluate metacommunity functions

In metacom: Analysis of the 'Elements of Metacommunity Structure'

Description

A list of 7 test matrices from two of the foundational papers on the Elements of Metacommunity Structure analysis (Leibold & Mikkelson 2002 and Presley et al. 2010)

Format

A list containing interaction matrices from Leibold & Mikkelson 2002 and Presley et al. 2010:

1) dim=(20 x 20) Randomly generated matrix ('rbinom(400,1,0.4)')

2) dim=(10 x 10) Leibold & Mikkelson 2002 Figure 1b

3) dim=(10 x 10) Leibold & Mikkelson 2002 Figure 2a

4) dim=(10 x 10) Leibold & Mikkelson 2002 Figure 2b

5) dim=(15 x 10) Leibold & Mikkelson 2002 Figure 3c

6) dim=(20 x 20) Presley et al. Figure 3c

7) dim(20 x 20) Presley et al. Figure 4a

Source

Leibold, M. A., & Mikkelson, G. M. (2002). Coherence, species turnover, and boundary clumping: elements of metacommunity structure. Oikos, 97(2), 237-250.

Presley, S. J., C. L. Higgins, and M. R. Willig. 2010. A comprehensive framework for the evaluation of metacommunity structure. Oikos 119:908-917

Examples

#load list containing interaction matrices
data(TestMatrices)

length(TestMatrices)
names(TestMatrices)

#image plot of interaction matrix, using the Imagine() function
test <- TestMatrices[[6]]
Imagine(test, fill=FALSE, order=TRUE)

metacom documentation built on April 17, 2020, 1:26 a.m.