esm_manhattan_plot: Manhattan plot of feature-cluster association p-values

In metasnf: Meta Clustering with Similarity Network Fusion

Manhattan plot of feature-cluster association p-values

Description

Manhattan plot of feature-cluster association p-values

Usage

esm_manhattan_plot(
  esm,
  neg_log_pval_thresh = 5,
  threshold = NULL,
  point_size = 5,
  jitter_width = 0.1,
  jitter_height = 0.1,
  text_size = 15,
  plot_title = NULL,
  hide_x_labels = FALSE,
  bonferroni_line = FALSE
)

Arguments

esm	Extended solutions data frame storing associations between features and cluster assignments. See ?extend_solutions.
neg_log_pval_thresh	Threshold for negative log p-values.
threshold	P-value threshold to plot dashed line at.
point_size	Size of points in the plot.
jitter_width	Width of jitter.
jitter_height	Height of jitter.
text_size	Size of text in the plot.
plot_title	Title of the plot.
hide_x_labels	If TRUE, hides x-axis labels.
bonferroni_line	If TRUE, plots a dashed black line at the Bonferroni-corrected equivalent of the p-value threshold.

Value

A Manhattan plot (class "gg", "ggplot") showing the association p-values of features against each solution in the provided solutions data frame.

Examples

esm_manhattan_plot(mock_ext_solutions_df)

metasnf documentation built on June 8, 2025, 12:47 p.m.