ext_solutions_df: Constructor for 'ext_solutions_df' class object.

In metasnf: Meta Clustering with Similarity Network Fusion

Constructor for ext_solutions_df class object.

Description

The extended solutions data frame is a column-extended variation of the solutions data frame. It contains association p-values relating cluster membership to feature distribution for all solutions in a solutions data frame and all features in a provided data list (or data lists). If a target data list was used during the call to extend_solutions, the extended solutions data frame will also have columns "min_pval", "mean_pval", and "max_pval" summarizing the p-values of just those features that were a part of the target list.

Usage

ext_solutions_df(ext_sol_dfl, sol_df, fts, target_dl)

Arguments

ext_sol_dfl	An extended solutions data frame-like object.
sol_df	Result of batch_snf storing cluster solutions and the settings that were used to generate them.
fts	A vector of all features that have association p-values stored in the resulting extended solutions data frame.
target_dl	A data list with features to calculate p-values for. Features in the target list will be included during p-value summary measure calculations.

Value

An ext_solutions_df class object.

metasnf documentation built on April 3, 2025, 5:40 p.m.