linear_adjust: Linearly correct data list by features with unwanted signal

In metasnf: Meta Clustering with Similarity Network Fusion

Linearly correct data list by features with unwanted signal

Description

Given a data list to correct and another data list of categorical features to linearly adjust for, corrects the first data list based on the residuals of the linear model relating the numeric features in the first data list to the unwanted signal features in the second data list.

Usage

linear_adjust(dl, unwanted_signal_list, sig_digs = NULL)

Arguments

dl	A nested list of input data from data_list().
unwanted_signal_list	A data list of categorical features that should have their mean differences removed in the first data list.
sig_digs	Number of significant digits to round the residuals to.

Value

A data list ("list") in which each data component has been converted to contain residuals off of the linear model built against the features in the unwanted_signal_list.

Examples

has_tutor <- sample(c(1, 0), size = 9, replace = TRUE)
math_score <- 70 + 30 * has_tutor + rnorm(9, mean = 0, sd = 5)

math_df <- data.frame(uid = paste0("id_", 1:9), math = math_score)
tutor_df <- data.frame(uid = paste0("id_", 1:9), tutor = has_tutor)

dl <- data_list(
    list(math_df, "math_score", "school", "continuous"),
    uid = "uid"
)

adjustment_dl <- data_list(
    list(tutor_df, "tutoring", "school", "categorical"),
    uid = "uid"
)

adjusted_dl <- linear_adjust(dl, adjustment_dl)

adjusted_dl[[1]]$"data"$"math"

# Equivalent to:
as.numeric(resid(lm(math_score ~ has_tutor)))

metasnf documentation built on April 3, 2025, 5:40 p.m.