plot.ext_solutions_df: Plot of cluster assignments in an extended solutions data...
In metasnf: Meta Clustering with Similarity Network Fusion

plot.ext_solutions_df

R Documentation

Plot of cluster assignments in an extended solutions data frame

Description

This plot, built on ComplexHeatmap::Heatmap(), visualizes the cluster assignments in a solutions data frame as a categorical heatmap with observations along the columns and clusters along the rows.

Usage

## S3 method for class 'ext_solutions_df'
plot(
  x,
  y = NULL,
  cluster_rows = TRUE,
  cluster_columns = TRUE,
  show_row_names = TRUE,
  show_column_names = TRUE,
  heatmap_legend_param = NULL,
  row_title = "Solution",
  column_title = "Observation",
  ...
)

## S3 method for class 't_ext_solutions_df'
plot(x, ...)

Arguments

`x`	An `ext_solutions_df` object.
`y`	Optional argument to `plot`, not used in this method.
`cluster_rows`	If the value is a logical, it controls whether to make cluster on rows. The value can also be a `hclust` or a `dendrogram` which already contains clustering. Check https://jokergoo.github.io/ComplexHeatmap-reference/book/a-single-heatmap.html#clustering .
`cluster_columns`	Whether make cluster on columns? Same settings as `cluster_rows`.
`show_row_names`	Whether show row names.
`show_column_names`	Whether show column names.
`heatmap_legend_param`	A list contains parameters for the heatmap legends. See `color_mapping_legend,ColorMapping-method` for all available parameters.
`row_title`	Title on the row.
`column_title`	Title on the column.
`...`	Additional arguments passed to `ComplexHeatmap::Heatmap()`.