demo_methylkit_met_all: Methyrate output dataset from methylKit

In metevalue: E-Value in the Omics Data Association Studies

Methyrate output dataset from methylKit

Description

The methyrate dataset samples "myCpG" data from the methylKit (a bioconductor package) for illustrating purpose.

Details

The data includes 7 columns:

- chr: Chromosome

- start: The positions of the start sites of the corresponding region

- end: The positions of the end sites of the corresponding region

- strand: Strand

- pvalue: The adjusted p-value based on BH method in MWU-test

- qvalue: cutoff for qvalue of differential methylation statistic

- methyl.diff: The difference between the group means of methylation level

Please check the vignette "metevalue" for details.

References

Akalin, Altuna, et al. "methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles." Genome biology 13.10 (2012): 1-9. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1186/gb-2012-13-10-r87")}

metevalue documentation built on May 31, 2023, 8:19 p.m.