evolveTraits: Evolve two traits up a tree
In metricTester: Test Metric and Null Model Statistical Performance
Description
Usage
Arguments
Details
Value
References
Examples
Description
Given a phylogeny, will generate associated trait data for two traits following a
Brownian motion evolution model.
Usage
1
evolveTraits(tree, sigma = 0.1)
Arguments
tree
A phylogeny.
sigma
The Brownian motion rate parameter.
Details
Evolves two traits independently up phylogeny with Brownian motion evolution
process. Sigma is currently set to 0.1 as default.
Value
A list where the first object is a phylogeny with the desired number of species
and the second object is a matrix of trait values for those species.
References
Miller, E. T., D. R. Farine, and C. H. Trisos. 2016. Phylogenetic community
structure metrics and null models: a review with new methods and software.
Ecography DOI: 10.1111/ecog.02070
Examples
1
2
3
tree <- geiger::sim.bdtree(b=0.1, d=0, stop="taxa", n=50)
results <- evolveTraits(tree)
metricTester documentation built on Dec. 16, 2019, 1:20 a.m.
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Description Usage Arguments Details Value References Examples
Description
Given a phylogeny, will generate associated trait data for two traits following a Brownian motion evolution model.
Usage
1 | evolveTraits(tree, sigma = 0.1)
|
Arguments
tree |
A phylogeny. |
sigma |
The Brownian motion rate parameter. |
Details
Evolves two traits independently up phylogeny with Brownian motion evolution process. Sigma is currently set to 0.1 as default.
Value
A list where the first object is a phylogeny with the desired number of species and the second object is a matrix of trait values for those species.
References
Miller, E. T., D. R. Farine, and C. H. Trisos. 2016. Phylogenetic community structure metrics and null models: a review with new methods and software. Ecography DOI: 10.1111/ecog.02070
Examples
1 2 3 | tree <- geiger::sim.bdtree(b=0.1, d=0, stop="taxa", n=50)
results <- evolveTraits(tree)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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