rubin1.all: First Rubin rule (all peptide)

Description Usage Arguments Value References Examples

View source: R/rubin1_all.R

Description

Computes the first Rubin's rule for all the peptide.

Usage

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rubin1.all(
  data,
  metacond,
  funcmean = meanImp_emmeans,
  is.parallel = FALSE,
  verbose = FALSE
)

Arguments

data

dataset

metacond

a factor to specify the groups

funcmean

function that should be used to compute the mean

is.parallel

should parallel computing be used?

verbose

should messages be displayed?

Value

A vector of estimated parameters.

References

M. Chion, Ch. Carapito and F. Bertrand (2021). Accounting for multiple imputation-induced variability for differential analysis in mass spectrometry-based label-free quantitative proteomics. arxiv:2108.07086. https://arxiv.org/abs/2108.07086.

Examples

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library(mi4p)
data(datasim)
datasim_imp <- multi.impute(data = datasim[,-1], conditions = 
attr(datasim,"metadata")$Condition, method = "MLE")
rubin1.all(datasim_imp[1:5,,],funcmean = meanImp_emmeans,
attr(datasim,"metadata")$Condition)

mi4p documentation built on Aug. 19, 2021, 5:07 p.m.