OX40Luminex: A sample data of beads based microRNA microarray

In miRada: MicroRNA Microarray Data Analysis

Description

A sample data of Luminex beads based microRNA microarray.

Usage

  data(OX40Luminex)

Format

A data frame with 3640 rows and 8 columns (variables).

Gene	character	MicroRNA names.
Treat0	numeric	measures under treatment with code '0'
Treat1	numeric	measures under treatment with code '1'
Treat2	numeric	measures under treatment with code '2'
Treat3	numeric	measures under treatment with code '3'
Background	numeric	measures of background noises
Sample	numeric	sample id.
Pool	numeric	Pool id.

An object lum of class luminx.

References

Wang, B., Zhang, S-G., Wang, X-F., Tan, M. and Xi, Y. (2012) "Testing for differentially-expressed microRNAs with errors-in-variables nonparametric regression", PLoS ONE 7(5): e37537. doi:10.1371/journal.pone.0037537.

Wang, B., Wang, X-F. and Xi, Y. (2011) "Normalizing bead-based microRNA expression data: a measurement error model-based approach", Bioinformatics, 27(11), 1506-1512.

Wang, B., Howell, P., Bruheim, S. Ju, J, Owen, L.B., Fodstad, O. and Xi, Y. (2011). "Systematic Evaluation of Three microRNA Profiling Platforms: Microarray, Beads Array, and Quantitative Real-Time PCR Array", PLoS ONE 6(2): e17167.

Wang, B. and Wertelecki, W. (2012) "Density Estimation for Data With Rounding Errors", Computational Statistics and Data Analysis, (in press). doi: 10.1016/j.csda.2012.02.016. link

Wang, B., Wang, X-F. and Xi, Y. (2011) "Normalizing bead-based microRNA expression data: a measurement error model-based approach", Bioinformatics, 27(11), 1506-1512.

Wang, X-F. and Wang, B. (2011) "Deconvolution Estimation in Measurement Error Models: The R Package decon", Journal of Statistical Software, 39(10), 1-24.

Examples

  data(OX40Luminex)

miRada documentation built on May 2, 2019, 7:59 a.m.