miic.export: Export miic result to different plotting methods
In miic: Learning Causal or Non-Causal Graphical Models Using Information Theory

Description Usage Arguments Details Value See Also Examples

This function creates an object built from the result returned by miic that is ready to be fed to different plotting methods.

1	miic.export(miic.res, method = NULL)

`miic.res`	[a miic graph object] The graph object returned by the miic execution.
`method`	A string representing the plotting method. Currently only "igraph" is supported.

See the details of specific function for each method. For igraph, see getIgraph.

A graph object adapted to the method.

getIgraph for details on the igraph exported object.

library(miic)
data(hematoData)

# execute MIIC (reconstruct graph)
miic.res <- miic(
  input_data = hematoData, latent = "yes",
  n_shuffles = 10, conf_threshold = 0.001
)

# Using igraph
if(require(igraph)) {
g = miic.export(miic.res, "igraph")
plot(g) # Default visualisation, calls igraph::plot.igraph()

# Specifying layout (see ?igraph::layout_)
l <-layout_with_kk(g)
plot(g, layout=l)

# Override some graphical parameters
plot(g, edge.curved = .2)
plot(g, vertex.shape="none", edge.color="gray85", vertex.label.color="gray10")
}