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Installation instruction for mixKernel
In mixKernel: Omics Data Integration Using Kernel Methods
This vignette provide installation for mixKernel instructions.
Installation of python dependencies
The following python modules are required for the functions performing
feature selection in mixKernel: autograd, scipy, sklearn, numpy
```{python installModule, eval=FALSE}
pip3 install autograd
pip3 install scipy
pip3 install sklearn
pip3 install numpy
## Installation of Bioconductor dependencies
Two Bioconductor packages are required for `mixKernel` installation: `mixOmics`
and `phyloseq`:
```r
install.packages("BiocManager")
BiocManager::install("mixOmics")
BiocManager::install("phyloseq")
mixKernel installation
Finally the installation is completed with:
install.packages("mixKernel")
Try the mixKernel package in your browser
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mixKernel documentation built on Sept. 18, 2023, 5:16 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
This vignette provide installation for mixKernel instructions.
Installation of python dependencies
The following python modules are required for the functions performing
feature selection in mixKernel: autograd, scipy, sklearn, numpy
```{python installModule, eval=FALSE} pip3 install autograd pip3 install scipy pip3 install sklearn pip3 install numpy
## Installation of Bioconductor dependencies
Two Bioconductor packages are required for `mixKernel` installation: `mixOmics`
and `phyloseq`:
```r
install.packages("BiocManager")
BiocManager::install("mixOmics")
BiocManager::install("phyloseq")
mixKernel installation
Finally the installation is completed with:
install.packages("mixKernel")
Try the mixKernel package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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