mkde: 2D and 3D movement-based kernel density estimates (MKDEs).

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Provides functions to compute and visualize movement-based kernel density estimates (MKDEs) for animal utilization distributions in 2 or 3 spatial dimensions.

Author
Jeff A. Tracey, James Sheppard, Jun Zhu, Robert Sinkovts, Amit Chourasia, Glenn Lockwood, and Robert N. Fisher
Date of publication
2014-08-24 00:26:36
Maintainer
Jeff A. Tracey <jatracey@usgs.gov>
License
GPL (>= 3)
Version
0.1

View on CRAN

Man pages

computeAreaRaster
Calculate cell areas from elevation raster.
computeContourValues
Find thresholds for contour intervals
computeSizeMKDE
Compute the area or volume of an MKDE.
condor
California condor locations
condordem
A RasterLayer containing a digital elevation model (DEM) for...
condordem120
A RasterLayer containing a digital elevation model (DEM) for...
deselectLocationsOutsideBounds
Flag 3D locations with out-of-bounds z-coordinates
deselectNonMovementSteps
Flag non-movements so they are excluded from MKDE estimation
dugong
Dugong locations
dugongdem
A RasterLayer containing bathymetry for the dugong data
estVarMKDE
Estimate move variances for 3D MKDE.
initializeAreaRaster
Initialize an area raster for a 2.5D MKDE.
initializeDensity
Calculate raster of density values for MKDE.
initializeMKDE2D
Set up a 2D MKDE object.
initializeMKDE3D
Set up a 3D MKDE object.
initializeMovementData
Initialize a movement data list
mkde2Dgrid
Movement-based kernel density estimate (MKDE) in 2D using...
mkde2Dinteraction
Probability of 2D spatial-temporal interaction.
mkde3Dgrid
Movement-based kernel density estimate (MKDE) in 3D using...
mkde3Dinteraction
Probability of 3D spatial-temporal interaction.
mkde-package
Movement-based kernel density estimates (MKDEs) in 2 or 3...
mkdeToRaster
MKDE to RasterLayer or RasterStack
panda
Giant panda locations
pandadem
A RasterLayer containing a digital elevation model (DEM) for...
plotMKDE
Make an image plot of an MKDE.
setMaximumZfromConstant
Initialize maximum allowable z-axis coordinates to a constant...
setMaximumZfromRaster
Initialize maximum z-axis value from a raster
setMinimumZfromConstant
Set minimum z-axis value to a constant.
setMinimumZfromRaster
Set minimum z-axis values from a raster
writeInterpolatedPathVTK
Write path to VTK.
writeObservedLocationVTK
Write observed locations to VTK.
writeRasterToVTK
Write a 2D raster to XDMF XML wrapper and binary data file.
writeRasterToXDMF
Write a 2D raster to XDMF XML wrapper and binary data file.
writeToGRASS
Write MKDE to a GRASS GIS 3D ASCII raster file.
writeToVTK
Write MKDE to an ASCII Visualization Tool Kit (VTK)...
writeToXDMF
Write 3D MKDE to XDMF XML wrapper and binary data file.

Files in this package

mkde
mkde/src
mkde/src/Makevars
mkde/src/Makevars.win
mkde/src/mkdeFunctions.h
mkde/src/mkdeFunctions.cpp
mkde/NAMESPACE
mkde/data
mkde/data/dugongdem.RData
mkde/data/condor.RData
mkde/data/condordem120.RData
mkde/data/pandadem.RData
mkde/data/condordem.RData
mkde/data/datalist
mkde/data/dugong.RData
mkde/data/panda.RData
mkde/R
mkde/R/mkdeFunctions.R
mkde/MD5
mkde/DESCRIPTION
mkde/man
mkde/man/panda.Rd
mkde/man/writeInterpolatedPathVTK.Rd
mkde/man/mkde3Dgrid.Rd
mkde/man/computeSizeMKDE.Rd
mkde/man/setMinimumZfromRaster.Rd
mkde/man/mkde2Dinteraction.Rd
mkde/man/initializeDensity.Rd
mkde/man/dugongdem.Rd
mkde/man/writeToXDMF.Rd
mkde/man/condor.Rd
mkde/man/setMaximumZfromRaster.Rd
mkde/man/condordem120.Rd
mkde/man/computeAreaRaster.Rd
mkde/man/condordem.Rd
mkde/man/estVarMKDE.Rd
mkde/man/initializeMKDE3D.Rd
mkde/man/mkde2Dgrid.Rd
mkde/man/computeContourValues.Rd
mkde/man/mkdeToRaster.Rd
mkde/man/dugong.Rd
mkde/man/mkde3Dinteraction.Rd
mkde/man/initializeMKDE2D.Rd
mkde/man/setMinimumZfromConstant.Rd
mkde/man/writeToVTK.Rd
mkde/man/mkde-package.Rd
mkde/man/deselectNonMovementSteps.Rd
mkde/man/initializeMovementData.Rd
mkde/man/writeObservedLocationVTK.Rd
mkde/man/writeRasterToXDMF.Rd
mkde/man/plotMKDE.Rd
mkde/man/writeRasterToVTK.Rd
mkde/man/initializeAreaRaster.Rd
mkde/man/setMaximumZfromConstant.Rd
mkde/man/deselectLocationsOutsideBounds.Rd
mkde/man/writeToGRASS.Rd
mkde/man/pandadem.Rd