PSOL_ResultExtraction: PSOL result extraction

In mlDNA: Machine Learning-based Differential Network Analysis of Transcriptome Data

Description

This function extracts the PSOL result.

Usage

PSOL_ResultExtraction(PSOLResDic, iterations = c(1:4) )

Arguments

PSOLResDic	PSOL result file directory.
iterations	a numeric vector specifying the results at given iteration times will be extracted.

Value

A list with length(iterations) components. For each components, there is a list with four components:

AUC	The AUC from cross validation experiments testing classifiers with positives and negatives.
positives	positive samples
negatives	negative samples
unlabels	unlabeled samples

Author(s)

Chuang Ma, Xiangfeng Wang

Examples

   
## Not run: 

   ##after run PSOL_InitialNegativeSelection and PSOL_NegativeExpansion
   ##extract the PSOL results at specified iteration times with the command:
   PSOLResDic <- "/home/wanglab/mlDNA/PSOL/"
   PSOLRes <- PSOL_ResultExtraction( PSOLResDic = PSOLResDic, iterations = c(1:4) )

## End(Not run)

mlDNA documentation built on May 2, 2019, 2:15 p.m.