mlmm.gwas.FMI: Dataset for examples with the mlmm.gwas package, male+female...

In mlmm.gwas: Pipeline for GWAS Using MLMM

Description

• Species: Helianthus annuus

• Individuals: 303

• Markers: 500

Usage

data(mlmm.gwas.FMI)

Format

• floweringDateFMI: a named numeric vector of length 303.

• female: a factor of length 303

• male: a factor of length 303

• hybrid: a factor of length 303

• Xf: a 303x500 numeric matrix

• Xm: a 303x500 numeric matrix

• Xfm: a 303x500 numeric matrix

• K.female: 36x36 numeric matrix

• K.male: 36x36 numeric matrix

• K.hybrid: 303x303 numeric matrix

Details

Variables:

• floweringDateFMI: flowering dates in °C.day, time since sowing.

• female: names of the female parent of the individuals

• male: names of the male parent of the individuals

• hybrid: names of the hybrids (name of female and male)

• Xf: female genotype matrix (additive)

• Xm: male genotype matrix (dominance)

• Xfm: female-male interaction genotype matrix (dominance)

• K.female: female "kinship" matrix (additive)

• K.male: male "kinship" matrix (dominance)

• K.hybrid: hybrid "kinship" matrix (dominance)

Source

Bonnafous & al. (2017)

mlmm.gwas documentation built on Aug. 5, 2019, 5:12 p.m.