taxonomy_opal_mlstr_get: Get available taxonomies in format used by Maelstrom Research

In mlstrOpalr: Support Compatibility Between 'Maelstrom' R Packages and 'Opal' Environment

Get available taxonomies in format used by Maelstrom Research

Description

Downloads all taxonomies from an Opal server in a specific tibble format used in the Maelstrom Research ecosystem.

Usage

taxonomy_opal_mlstr_get(opal)

Arguments

opal	Opal login attributes.

Details

Opal is the OBiBa application for data management, and Opal environments can be integrated with RStudio environments using the package opalr. The user must have adequate credentials to interact with a specific Opal environment. Some function errors produced may be associated with the handler or Opal read/write permissions.

Value

A tibble identifying a taxonomy (generally generated from Opal taxonomy.

See Also

Please see Opal documentation for complete documentation. madshapR::as_taxonomy()

Examples

## Not run: 

library(opalr)
opal <-
 opal.login('administrator','password',
   url ='https://opal-demo.obiba.org/')

try(taxonomy_opal_mlstr_get(opal))
  

## End(Not run)

mlstrOpalr documentation built on Oct. 11, 2023, 5:15 p.m.