subgraph_difference_plot: Visualization of a difference subgroup using a circular graph

In mnda: Multiplex Network Differential Analysis (MNDA)

Visualization of a difference subgroup using a circular graph

Description

Visualization of a difference subgroup using a circular graph

Usage

subgraph_difference_plot(
  mnda.graph,
  node.importance,
  n.var.nodes = 5,
  n.neigh = 10,
  diff.threshold = 0,
  edge.width = c(0.5, 4)
)

Arguments

mnda.graph	mnda.graph data
node.importance	named numeric vector of the node importance to sort the nodes clockwise.
n.var.nodes	number of variable nodes to show
n.neigh	number of neighboring nodes to show
diff.threshold	edge threshold
edge.width	numeric value to adjust the thickness of the edges in plot. Two modes are defined: [i] two numbers indicating the min and max (default: c(0.5,4)); or [ii] a single number that weights the min/max of original edge weights.

Value

nothing to return

Examples

myNet = network_gen(N_nodes = 100, N_var_nodes = 5, N_var_nei = 90, noise_sd = .01)
graph_data = myNet[["data_graph"]]
node_importance_dummy = 1:100
names(node_importance_dummy) = 1:100
subgraph_difference_plot(graph_data, node.importance = node_importance_dummy)

mnda documentation built on Feb. 16, 2023, 5:32 p.m.