geom_categorical_model: Regression model with one categorical explanatory/predictor...
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geom_categorical_model

R Documentation

Regression model with one categorical explanatory/predictor variable

Description

geom_categorical_model() fits a regression model using the categorical x axis as the explanatory variable, and visualizes the model's fitted values as piece-wise horizontal line segments. Confidence interval bands can be included in the visualization of the model. Like geom_parallel_slopes(), this function has the same nature as geom_smooth() from the ggplot2 package, but provides functionality that geom_smooth() currently doesn't have. When using a categorical predictor variable, the intercept corresponds to the mean for the baseline group, while coefficients for the non-baseline groups are offsets from this baseline. Thus in the visualization the baseline for comparison group's median is marked with a solid line, whereas all offset groups' medians are marked with dashed lines.

Usage

geom_categorical_model(
  mapping = NULL,
  data = NULL,
  position = "identity",
  ...,
  se = TRUE,
  level = 0.95,
  na.rm = FALSE,
  show.legend = NA,
  inherit.aes = TRUE
)

Arguments

`mapping`	Set of aesthetic mappings created by `aes()`. If specified and `inherit.aes = TRUE` (the default), it is combined with the default mapping at the top level of the plot. You must supply `mapping` if there is no plot mapping.
`data`	The data to be displayed in this layer. There are three options: If `NULL`, the default, the data is inherited from the plot data as specified in the call to `ggplot()`. A `data.frame`, or other object, will override the plot data. All objects will be fortified to produce a data frame. See `fortify()` for which variables will be created. A `function` will be called with a single argument, the plot data. The return value must be a `data.frame`, and will be used as the layer data. A `function` can be created from a `formula` (e.g. `~ head(.x, 10)`).
`position`	A position adjustment to use on the data for this layer. This can be used in various ways, including to prevent overplotting and improving the display. The `position` argument accepts the following: The result of calling a position function, such as `position_jitter()`. This method allows for passing extra arguments to the position. A string naming the position adjustment. To give the position as a string, strip the function name of the `position_` prefix. For example, to use `position_jitter()`, give the position as `"jitter"`. For more information and other ways to specify the position, see the layer position documentation.
`...`	Other arguments passed on to `layer()`'s `params` argument. These arguments broadly fall into one of 4 categories below. Notably, further arguments to the `position` argument, or aesthetics that are required can not be passed through `...`. Unknown arguments that are not part of the 4 categories below are ignored. Static aesthetics that are not mapped to a scale, but are at a fixed value and apply to the layer as a whole. For example, `colour = "red"` or `linewidth = 3`. The geom's documentation has an Aesthetics section that lists the available options. The 'required' aesthetics cannot be passed on to the `params`. Please note that while passing unmapped aesthetics as vectors is technically possible, the order and required length is not guaranteed to be parallel to the input data. When constructing a layer using a `⁠stat_()⁠` function, the `...` argument can be used to pass on parameters to the `geom` part of the layer. An example of this is `stat_density(geom = "area", outline.type = "both")`. The geom's documentation lists which parameters it can accept. Inversely, when constructing a layer using a `⁠geom_()⁠` function, the `...` argument can be used to pass on parameters to the `stat` part of the layer. An example of this is `geom_area(stat = "density", adjust = 0.5)`. The stat's documentation lists which parameters it can accept. The `key_glyph` argument of `layer()` may also be passed on through `...`. This can be one of the functions described as key glyphs, to change the display of the layer in the legend.
`se`	Display confidence interval around model lines? `TRUE` by default.
`level`	Level of confidence interval to use (0.95 by default).
`na.rm`	If `FALSE`, the default, missing values are removed with a warning. If `TRUE`, missing values are silently removed.
`show.legend`	logical. Should this layer be included in the legends? `NA`, the default, includes if any aesthetics are mapped. `FALSE` never includes, and `TRUE` always includes. It can also be a named logical vector to finely select the aesthetics to display.
`inherit.aes`	If `FALSE`, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. `borders()`.

Examples

library(dplyr)
library(ggplot2)

p <- ggplot(mpg, aes(x = drv, y = hwy)) +
  geom_point() +
  geom_categorical_model()
p

# In the above visualization, the solid line corresponds to the mean of 19.2
# for the baseline group "4", whereas the dashed lines correspond to the
# means of 28.19 and 21.02 for the non-baseline groups "f" and "r" respectively.
# In the corresponding regression table however the coefficients for "f" and "r"
# are presented as offsets from the mean for "4":
model <- lm(hwy ~ drv, data = mpg)
get_regression_table(model)

# You can use different colors for each categorical level
p %+% aes(color = drv)

# But mapping the color aesthetic doesn't change the model that is fit
p %+% aes(color = class)

moderndive documentation built on Sept. 11, 2024, 9:26 p.m.