moduleColor: Basic Module Functions
Version 1.08-3

Methods for color labeling, calculation of eigengenes, merging of closely related modules.

AuthorPeter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu>
Date of publication2014-11-26 08:15:24
MaintainerPeter Langfelder <Peter.Langfelder@gmail.com>
LicenseGPL (>= 2)
Version1.08-3
URL http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/BranchCutting/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("moduleColor")

Getting started

Package overview

Popular man pages

checkSets: Check structure and retrieve sizes of a group of datasets.
collectGarbage: Iterative garbage collection.
consensusMEDissimilarity: Consensus dissimilarity of module eigengenes.
labels2colors: Convert numerical labels to colors.
moduleColor.setMEprefix: Set the prefix used to label module eigengenes.
normalizeLabels: Transform numerical labels into normal order.
standardColors: Colors this library uses for labeling modules.
See all...

All man pages Function index File listing

Man pages

checkSets: Check structure and retrieve sizes of a group of datasets.
collectGarbage: Iterative garbage collection.
consensusMEDissimilarity: Consensus dissimilarity of module eigengenes.
consensusOrderMEs: Put close eigenvectors next to each other in several sets.
fixDataStructure: Put single-set data into a form useful for multiset...
labels2colors: Convert numerical labels to colors.
mergeCloseModules: Merge close modules of gene expression data.
moduleColor.getMEprefix: Get the prefix used to label module eigengenes.
moduleColor-package: Basic Module Functions
moduleColor.revisionDate: Get the last revision date of the package.
moduleColor.setMEprefix: Set the prefix used to label module eigengenes.
moduleColor.version: Get the version number of the package.
moduleEigengenes: Calculate module eigengenes.
moduleNumber: Fixed-height cut of a dendrogram.
multiSetMEs: Calculate module eigengenes.
normalizeLabels: Transform numerical labels into normal order.
orderMEs: Put close eigenvectors next to each other
plotHclustColors: Plot color rows corresponding to modules
removeGreyME: Removes the grey eigengene from a given collection of...
standardColors: Colors this library uses for labeling modules.

Functions

checkSets Man page Source code
clustOrder Source code
collectGarbage Man page Source code
consensusMEDissimilarity Man page Source code
consensusOrderMEs Man page Source code
fixDataStructure Man page Source code
labels2colors Man page Source code
mergeCloseModules Man page Source code
moduleColor Man page
moduleColor-package Man page
moduleColor.getMEprefix Man page Source code
moduleColor.revisionDate Man page Source code
moduleColor.setMEprefix Man page Source code
moduleColor.version Man page Source code
moduleEigengenes Man page Source code
moduleNumber Man page Source code
multiSetMEs Man page Source code
normalizeLabels Man page Source code
orderMEs Man page Source code
plotHclustColors Man page Source code
removeGreyME Man page Source code
standardColors Man page Source code

Files

NAMESPACE
Changelog
R
R/Functions.R
MD5
DESCRIPTION
man
man/removeGreyME.Rd
man/consensusOrderMEs.Rd
man/orderMEs.Rd
man/collectGarbage.Rd
man/normalizeLabels.Rd
man/moduleColor.version.Rd
man/moduleColor.revisionDate.Rd
man/moduleColor.getMEprefix.Rd
man/fixDataStructure.Rd
man/mergeCloseModules.Rd
man/labels2colors.Rd
man/plotHclustColors.Rd
man/consensusMEDissimilarity.Rd
man/moduleEigengenes.Rd
man/checkSets.Rd
man/standardColors.Rd
man/multiSetMEs.Rd
man/moduleColor-package.Rd
man/moduleColor.setMEprefix.Rd
man/moduleNumber.Rd
moduleColor documentation built on May 19, 2017, 1:41 p.m.

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