moduleColor: Basic Module Functions

Methods for color labeling, calculation of eigengenes, merging of closely related modules.

Author
Peter Langfelder <Peter.Langfelder@gmail.com> and Steve Horvath <SHorvath@mednet.ucla.edu>
Date of publication
2014-11-26 08:15:24
Maintainer
Peter Langfelder <Peter.Langfelder@gmail.com>
License
GPL (>= 2)
Version
1.08-3
URLs

View on CRAN

Man pages

checkSets
Check structure and retrieve sizes of a group of datasets.
collectGarbage
Iterative garbage collection.
consensusMEDissimilarity
Consensus dissimilarity of module eigengenes.
consensusOrderMEs
Put close eigenvectors next to each other in several sets.
fixDataStructure
Put single-set data into a form useful for multiset...
labels2colors
Convert numerical labels to colors.
mergeCloseModules
Merge close modules of gene expression data.
moduleColor.getMEprefix
Get the prefix used to label module eigengenes.
moduleColor-package
Basic Module Functions
moduleColor.revisionDate
Get the last revision date of the package.
moduleColor.setMEprefix
Set the prefix used to label module eigengenes.
moduleColor.version
Get the version number of the package.
moduleEigengenes
Calculate module eigengenes.
moduleNumber
Fixed-height cut of a dendrogram.
multiSetMEs
Calculate module eigengenes.
normalizeLabels
Transform numerical labels into normal order.
orderMEs
Put close eigenvectors next to each other
plotHclustColors
Plot color rows corresponding to modules
removeGreyME
Removes the grey eigengene from a given collection of...
standardColors
Colors this library uses for labeling modules.

Files in this package

moduleColor
moduleColor/NAMESPACE
moduleColor/Changelog
moduleColor/R
moduleColor/R/Functions.R
moduleColor/MD5
moduleColor/DESCRIPTION
moduleColor/man
moduleColor/man/removeGreyME.Rd
moduleColor/man/consensusOrderMEs.Rd
moduleColor/man/orderMEs.Rd
moduleColor/man/collectGarbage.Rd
moduleColor/man/normalizeLabels.Rd
moduleColor/man/moduleColor.version.Rd
moduleColor/man/moduleColor.revisionDate.Rd
moduleColor/man/moduleColor.getMEprefix.Rd
moduleColor/man/fixDataStructure.Rd
moduleColor/man/mergeCloseModules.Rd
moduleColor/man/labels2colors.Rd
moduleColor/man/plotHclustColors.Rd
moduleColor/man/consensusMEDissimilarity.Rd
moduleColor/man/moduleEigengenes.Rd
moduleColor/man/checkSets.Rd
moduleColor/man/standardColors.Rd
moduleColor/man/multiSetMEs.Rd
moduleColor/man/moduleColor-package.Rd
moduleColor/man/moduleColor.setMEprefix.Rd
moduleColor/man/moduleNumber.Rd