monogeneaGM: Geometric Morphometric Analysis of Monogenean Anchors

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Geometric morphometric and evolutionary biology analyses of anchor shape from four-anchored monogeneans.

Author
Tsung Fei Khang
Date of publication
2016-02-13 00:50:28
Maintainer
Tsung Fei Khang <tfkhang@um.edu.my>
License
GPL (>= 2)
Version
1.1

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Man pages

anglecheck
Angle swept by a ray
anglePolygon
Internal angles of a polygon
boxplotSort
Median-ordered box plot
colorBar
Add a color bar
estimated_ancestral_va
Estimated Generalized Procrustes Analysis (GPA) coordinates...
heatmapAnnot
Annotated heat map
hsplot
Scatter plot with marginal histograms
liewi_gpa
Array data of Generalized Procrustes Analysis (GPA)...
ligophorus_shape
Shape variable data for 13 _Ligophorus_ species
ligophorus_tpsdata
Raw landmark coordinate data for 13 _Ligophorus_ species
ligotree
Maximum likelihood tree for 13 _Ligophorus_ species
matrix2list
Partitioning a matrix by row into objects of a list
matrix2list.2
Partitioning a matrix by row labels into objects of a list
pca2d
Principal component analyis
pcloadhm
Heat map representation of principal component loadings of...
plotCircular
Circular plot
plotLM
Scatter plot of Generalized Procrustes Analysis (GPA)...
polyVis
Wireframe plot of monogenean anchor
procrustesFit
Generalized Procrustes Analysis
procrustesFit.2
Mass Extraction of Generalized Procrustes Analysis...
pwdist
Pairwise Euclidean distances between landmarks
pwed_pd
Physical distance between landmarks in ventral and dorsal...
Qscore
Data quality control
shapeEvo
Statistical test of deviation from directional uniformity and...
spcolmap
Species-color map
stdLM
Standardization of landmark configuration by a reference...
tpColorPlot2d
Color-annotated scatter plot with transparency control
tpColorPlot3d
Color-annotated three-dimensional scatter plot with...
tpsRead
Reading tps files into R
va_mean
Mean Generalized Procrustes Analysis (GPA) coordinates for...

Files in this package

monogeneaGM
monogeneaGM/NAMESPACE
monogeneaGM/NEWS
monogeneaGM/data
monogeneaGM/data/ligophorus_shape.rda
monogeneaGM/data/pwed_pd.rda
monogeneaGM/data/va_mean.rda
monogeneaGM/data/spcolmap.rda
monogeneaGM/data/estimated_ancestral_va.rda
monogeneaGM/data/ligotree.rda
monogeneaGM/data/liewi_gpa.rda
monogeneaGM/data/ligophorus_tpsdata.rda
monogeneaGM/R
monogeneaGM/R/plotLM.R
monogeneaGM/R/va_mean.R
monogeneaGM/R/stdLM.R
monogeneaGM/R/matrix2list.2.R
monogeneaGM/R/ligotree.R
monogeneaGM/R/tpColorPlot3d.R
monogeneaGM/R/pwed_pd.R
monogeneaGM/R/matrix2list.R
monogeneaGM/R/pca2d.R
monogeneaGM/R/anglePolygon.R
monogeneaGM/R/Qscore.R
monogeneaGM/R/hsplot.R
monogeneaGM/R/anglecheck.R
monogeneaGM/R/tpColorPlot2d.R
monogeneaGM/R/pcloadhm.R
monogeneaGM/R/polyVis.R
monogeneaGM/R/heatmapAnnot.R
monogeneaGM/R/ligophorus_shape.R
monogeneaGM/R/colorBar.R
monogeneaGM/R/ligophorus_tpsdata.R
monogeneaGM/R/tpsRead.R
monogeneaGM/R/boxplotSort.R
monogeneaGM/R/shapeEvo.R
monogeneaGM/R/procrustesFit.2.R
monogeneaGM/R/spcolmap.R
monogeneaGM/R/estimated_ancestral_va.R
monogeneaGM/R/liewi_gpa.R
monogeneaGM/R/procrustesFit.R
monogeneaGM/R/plotCircular.R
monogeneaGM/R/pwdist.R
monogeneaGM/MD5
monogeneaGM/DESCRIPTION
monogeneaGM/man
monogeneaGM/man/hsplot.Rd
monogeneaGM/man/boxplotSort.Rd
monogeneaGM/man/procrustesFit.2.Rd
monogeneaGM/man/shapeEvo.Rd
monogeneaGM/man/pwdist.Rd
monogeneaGM/man/heatmapAnnot.Rd
monogeneaGM/man/liewi_gpa.Rd
monogeneaGM/man/pcloadhm.Rd
monogeneaGM/man/anglecheck.Rd
monogeneaGM/man/va_mean.Rd
monogeneaGM/man/plotLM.Rd
monogeneaGM/man/matrix2list.2.Rd
monogeneaGM/man/procrustesFit.Rd
monogeneaGM/man/tpColorPlot3d.Rd
monogeneaGM/man/tpsRead.Rd
monogeneaGM/man/anglePolygon.Rd
monogeneaGM/man/Qscore.Rd
monogeneaGM/man/estimated_ancestral_va.Rd
monogeneaGM/man/ligotree.Rd
monogeneaGM/man/ligophorus_shape.Rd
monogeneaGM/man/spcolmap.Rd
monogeneaGM/man/matrix2list.Rd
monogeneaGM/man/pwed_pd.Rd
monogeneaGM/man/tpColorPlot2d.Rd
monogeneaGM/man/ligophorus_tpsdata.Rd
monogeneaGM/man/plotCircular.Rd
monogeneaGM/man/pca2d.Rd
monogeneaGM/man/polyVis.Rd
monogeneaGM/man/colorBar.Rd
monogeneaGM/man/stdLM.Rd