monogeneaGM: Geometric Morphometric Analysis of Monogenean Anchors

Geometric morphometric and evolutionary biology analyses of anchor shape from four-anchored monogeneans.

AuthorTsung Fei Khang
Date of publication2016-02-13 00:50:28
MaintainerTsung Fei Khang <tfkhang@um.edu.my>
LicenseGPL (>= 2)
Version1.1

View on CRAN

Man pages

anglecheck: Angle swept by a ray

anglePolygon: Internal angles of a polygon

boxplotSort: Median-ordered box plot

colorBar: Add a color bar

estimated_ancestral_va: Estimated Generalized Procrustes Analysis (GPA) coordinates...

heatmapAnnot: Annotated heat map

hsplot: Scatter plot with marginal histograms

liewi_gpa: Array data of Generalized Procrustes Analysis (GPA)...

ligophorus_shape: Shape variable data for 13 _Ligophorus_ species

ligophorus_tpsdata: Raw landmark coordinate data for 13 _Ligophorus_ species

ligotree: Maximum likelihood tree for 13 _Ligophorus_ species

matrix2list: Partitioning a matrix by row into objects of a list

matrix2list.2: Partitioning a matrix by row labels into objects of a list

pca2d: Principal component analyis

pcloadhm: Heat map representation of principal component loadings of...

plotCircular: Circular plot

plotLM: Scatter plot of Generalized Procrustes Analysis (GPA)...

polyVis: Wireframe plot of monogenean anchor

procrustesFit: Generalized Procrustes Analysis

procrustesFit.2: Mass Extraction of Generalized Procrustes Analysis...

pwdist: Pairwise Euclidean distances between landmarks

pwed_pd: Physical distance between landmarks in ventral and dorsal...

Qscore: Data quality control

shapeEvo: Statistical test of deviation from directional uniformity and...

spcolmap: Species-color map

stdLM: Standardization of landmark configuration by a reference...

tpColorPlot2d: Color-annotated scatter plot with transparency control

tpColorPlot3d: Color-annotated three-dimensional scatter plot with...

tpsRead: Reading tps files into R

va_mean: Mean Generalized Procrustes Analysis (GPA) coordinates for...

Files in this package

monogeneaGM
monogeneaGM/NAMESPACE
monogeneaGM/NEWS
monogeneaGM/data
monogeneaGM/data/ligophorus_shape.rda
monogeneaGM/data/pwed_pd.rda
monogeneaGM/data/va_mean.rda
monogeneaGM/data/spcolmap.rda
monogeneaGM/data/estimated_ancestral_va.rda
monogeneaGM/data/ligotree.rda
monogeneaGM/data/liewi_gpa.rda
monogeneaGM/data/ligophorus_tpsdata.rda
monogeneaGM/R
monogeneaGM/R/plotLM.R monogeneaGM/R/va_mean.R monogeneaGM/R/stdLM.R monogeneaGM/R/matrix2list.2.R monogeneaGM/R/ligotree.R monogeneaGM/R/tpColorPlot3d.R monogeneaGM/R/pwed_pd.R monogeneaGM/R/matrix2list.R monogeneaGM/R/pca2d.R monogeneaGM/R/anglePolygon.R monogeneaGM/R/Qscore.R monogeneaGM/R/hsplot.R monogeneaGM/R/anglecheck.R monogeneaGM/R/tpColorPlot2d.R monogeneaGM/R/pcloadhm.R monogeneaGM/R/polyVis.R monogeneaGM/R/heatmapAnnot.R monogeneaGM/R/ligophorus_shape.R monogeneaGM/R/colorBar.R monogeneaGM/R/ligophorus_tpsdata.R monogeneaGM/R/tpsRead.R monogeneaGM/R/boxplotSort.R monogeneaGM/R/shapeEvo.R monogeneaGM/R/procrustesFit.2.R monogeneaGM/R/spcolmap.R monogeneaGM/R/estimated_ancestral_va.R monogeneaGM/R/liewi_gpa.R monogeneaGM/R/procrustesFit.R monogeneaGM/R/plotCircular.R monogeneaGM/R/pwdist.R
monogeneaGM/MD5
monogeneaGM/DESCRIPTION
monogeneaGM/man
monogeneaGM/man/hsplot.Rd monogeneaGM/man/boxplotSort.Rd monogeneaGM/man/procrustesFit.2.Rd monogeneaGM/man/shapeEvo.Rd monogeneaGM/man/pwdist.Rd monogeneaGM/man/heatmapAnnot.Rd monogeneaGM/man/liewi_gpa.Rd monogeneaGM/man/pcloadhm.Rd monogeneaGM/man/anglecheck.Rd monogeneaGM/man/va_mean.Rd monogeneaGM/man/plotLM.Rd monogeneaGM/man/matrix2list.2.Rd monogeneaGM/man/procrustesFit.Rd monogeneaGM/man/tpColorPlot3d.Rd monogeneaGM/man/tpsRead.Rd monogeneaGM/man/anglePolygon.Rd monogeneaGM/man/Qscore.Rd monogeneaGM/man/estimated_ancestral_va.Rd monogeneaGM/man/ligotree.Rd monogeneaGM/man/ligophorus_shape.Rd monogeneaGM/man/spcolmap.Rd monogeneaGM/man/matrix2list.Rd monogeneaGM/man/pwed_pd.Rd monogeneaGM/man/tpColorPlot2d.Rd monogeneaGM/man/ligophorus_tpsdata.Rd monogeneaGM/man/plotCircular.Rd monogeneaGM/man/pca2d.Rd monogeneaGM/man/polyVis.Rd monogeneaGM/man/colorBar.Rd monogeneaGM/man/stdLM.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.