GetSplitStats: Permutation tests results for each split in a conditional...

In moreparty: A Toolbox for Conditional Inference Trees and Random Forests

Permutation tests results for each split in a conditional tree.

Description

This function displays the results of the variable selection process for each split of a conditional tree, i.e. the p-values from permutation tests of independence between every predictor and the dependent variable. This may help to assess the stability of the tree.

Usage

GetSplitStats(ct)

Arguments

ct	A tree of class constparty (as returned by ctree from partykit package).

Details

The ratio index represents the ratio between the association test result for the splitting variable and the association test result for another candidate variable for splitting. It is always greater than 1. The closer it is to 1, the tighter the competition for the splitting variable, and therefore the more potentially unstable the node concerned. Conversely, the higher the ratio, the more the splitting variable has dominated the competition, and the more stable the node is likely to be.

Value

A list of two elements :

details	a list of data frames (one for each inner node), with one row per candidate variable, and test statistic and p-value of the permutation test of independence, criterion (equal to log(1-p)) and ratio (criterion/max(criterion) as columns. Variables are sorted by decreasing degree of association with the dependent variable.
summary	a data frame with one row per inner node and 5 variables : the mode id, the splitting variable, the best candidate to split among the other variables, the ratio of the criterion of the splitting variable divided by the criterion of the best variable among the others.

Note

see also https://stats.stackexchange.com/questions/171301/interpreting-ctree-partykit-output-in-r

Author(s)

Nicolas Robette

References

Hothorn T, Hornik K, Van De Wiel MA, Zeileis A. "A lego system for conditional inference". The American Statistician. 60:257–263, 2006.

Hothorn T, Hornik K, Zeileis A. "Unbiased Recursive Partitioning: A Conditional Inference Framework". Journal of Computational and Graphical Statistics, 15(3):651-674, 2006.

See Also

ctree

Examples

  data(iris)
  iris2 = iris
  iris2$Species = factor(iris$Species == "versicolor")
  iris.ct = partykit::ctree(Species ~ ., data = iris2)
  GetSplitStats(iris.ct)

moreparty documentation built on Nov. 22, 2023, 5:08 p.m.