write_experimental_design: Create template for experimental design

In mpwR: Standardized Comparison of Workflows in Mass Spectrometry-Based Bottom-Up Proteomics

Create template for experimental design

Description

Generation of a exp_design.csv file for using the import option with load_experimental_design.

Usage

write_experimental_design(path)

Arguments

path	Path to folder where exp_design file is generated.

Details

The generated exp_design.csv file can be used as starting point for importing with the load_experimental_design option for mpwR. Example entries are provided. The template file - exp_design.csv - is generated under the specified path.

Value

This function returns a csv-file with the following columns:

• analysis_name - name of your analysis.

• software - name of used software: DIA-NN, MaxQuant, PD, Spectronaut, Generic.

• path_to_folder - path to analysis folder.

Author(s)

Oliver Kardell

Examples

## Not run: 
write_experimental_design(path = "DIRECTORY_WHERE_FILE_IS_GENERATED")

## End(Not run)

mpwR documentation built on June 8, 2025, 10:47 a.m.