Man pages for mseapca
Metabolite Set Enrichment Analysis for Loadings
| csv2list | Convert metabolite set / csv to list |
| fasting_mseapca | Metabolome data from a fasting mouse study |
| list2xml | Save compound set as XML file |
| msea_ora | Wrapper function for over-representation analysis (ORA) |
| msea_ora_range | Wrapper function for Over-Representation Analysis with... |
| msea_sub | MSEA by Subramanian et al. |
| ora_all | ORA using all metabolites |
| ora_bino | Over-representation analysis with binomial resampling... |
| ora_det | ORA using detected metabolites |
| ora_est | ORA adjusting for undetected metabolites |
| ora_full | Over-representation analysis with full enumeration of... |
| pathbank2list | Generate metabolite set list from PathBank database |
| pathway | Example of metabolite set list for fasting and covid19... |
| read_pathway | Read metabolite set file (*.xml) |
| setlabel | Generate binary label matrix of metabolite set |
| ssea_ora | Single sample enrichment analysis by over representation... |
