pathway: Example dataset for fasting and covid19 datasets

In mseapca: Metabolite Set Enrichment Analysis for Loadings

Example dataset for fasting and covid19 datasets

Description

This data includes a metabolite set list and metabolite name list for fasting, and a metabolite set list for covid19 dataset within the "loadings" package

Usage

data(pathway)

Arguments

The list object pathway contains the following elements:

fasting : metabolite set list for fasting mouse dataset

data$fasting : metabolite name list for fasting mouse dataset

covid19$proteomics : protein set list for covid19 dataset.

References

Yamamoto H., Fujimori T., Sato H., Ishikawa G., Kami K., Ohashi Y. (2014). "Statistical hypothesis testing of factor loading in principal component analysis and its application to metabolite set enrichment analysis". BMC Bioinformatics, (2014) 15(1):51.

B. Shen, et al, Proteomic and Metabolomic Characterization of COVID-19 Patient Sera, Cell. 182 (2020) 59-72.e15.

Examples

data(pathway)

mseapca documentation built on Nov. 4, 2023, 5:06 p.m.