browse_msig: Retrieve Gene set Names from MSigDB database Retrieve gene...

In msig: An R Package for Exploring Molecular Signatures Database

Description

Retrieve Gene set Names from MSigDB database Retrieve gene set names from MSigDB database by the gene set name and collection. the search filed is gene name.

Usage

browse_msig(geneSetName = "", collection = "")

Arguments

geneSetName	one keyword for gene set name, default is empty
collection	one collection, default is empty

Value

gene set names

Examples

# missing genSetName and collection to get all gene set names
x <- browse_msig()
# search for gene names include immune
x <- browse_msig('immune')

x |>
    msig_view('cells','response','to','m')

# search for gene names include immune in c8
browse_msig('immune','c8')

# gene names in c8
browse_msig('immune','c8')

msig documentation built on June 29, 2021, 9:08 a.m.