browse_msig: Retrieve Gene set Names from MSigDB database Retrieve gene...

Description Usage Arguments Value Examples

View source: R/online_gst_brow_2_query.R

Description

Retrieve Gene set Names from MSigDB database Retrieve gene set names from MSigDB database by the gene set name and collection. the search filed is gene name.

Usage

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browse_msig(geneSetName = "", collection = "")

Arguments

geneSetName

one keyword for gene set name, default is empty

collection

one collection, default is empty

Value

gene set names

Examples

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# missing genSetName and collection to get all gene set names
x <- browse_msig()
# search for gene names include immune
x <- browse_msig('immune')

x |>
    msig_view('cells','response','to','m')

# search for gene names include immune in c8
browse_msig('immune','c8')

# gene names in c8
browse_msig('immune','c8')

msig documentation built on June 29, 2021, 9:08 a.m.

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