msm.object | R Documentation |
The msm
function returns a list with the following components.
These are intended for developers and confident users. To extract results
from fitted model objects, functions such as qmatrix.msm
or
print.msm
should be used instead.
call |
The original call to |
Qmatrices |
A list of matrices. The first
component, labelled |
QmatricesSE |
The standard error matrices corresponding to
|
QmatricesL , QmatricesU |
Corresponding lower and
upper symmetric confidence limits, of width 0.95 unless specified otherwise
by the |
Ematrices |
A list of matrices. The first
component, labelled |
EmatricesSE |
The standard error matrices corresponding to
|
EmatricesL , EmatricesU |
Corresponding lower and
upper symmetric confidence limits, of width 0.95 unless specified otherwise
by the |
minus2loglik |
Minus twice the maximised log-likelihood. |
deriv |
Derivatives of the minus twice log-likelihood at its maximum. |
estimates |
Vector of untransformed maximum likelihood estimates
returned from |
estimates.t |
Vector of transformed maximum likelihood estimates with intensities and probabilities on their natural scales. |
fixedpars |
Indices of |
center |
Indicator for whether the estimation was performed with covariates centered on their means in the data. |
covmat |
Covariance matrix corresponding to |
ci |
Matrix of confidence intervals corresponding to
|
opt |
Return value from the optimisation routine (such as
|
foundse |
Logical value indicating whether the Hessian was positive-definite at the supposed maximum of the likelihood. If not, the covariance matrix of the parameters is unavailable. In these cases the optimisation has probably not converged to a maximum. |
data |
A list giving the data used for the model fit, for use in
post-processing. To extract it, use the methods
The format of this element changed in version 1.4 of msm, so that it
now contains a |
qmodel |
A list of objects representing the
transition matrix structure and options for likelihood calculation. See
|
emodel |
A list of objects representing the misclassification model
structure, for models specified using the |
qcmodel |
A list
of objects representing the model for covariates on transition intensities.
See |
ecmodel |
A list of objects
representing the model for covariates on transition intensities. See
|
hmodel |
A list of objects representing
the hidden Markov model structure. See |
cmodel |
A list giving information about censored states. See
|
pci |
Cut points for time-varying
intensities, as supplied to |
paramdata |
A list giving
information about the parameters of the multi-state model. See
|
cl |
Confidence interval width, as
supplied to |
covariates |
Formula for covariates on
intensities, as supplied to |
misccovariates |
Formula for covariates on misclassification
probabilities, as supplied to |
hcovariates |
Formula
for covariates on hidden Markov model outcomes, as supplied to
|
initcovariates |
Formula for covariates on initial
state occupancy probabilities in hidden Markov models, as supplied to
|
sojourn |
A list as returned by
|
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