get_multiOmics_diffNetworks: Get a table of all significant interactions across categories
In multiDEGGs: Multi-Omic Differentially Expressed Gene-Gene Pairs

get_multiOmics_diffNetworks

R Documentation

Get a table of all significant interactions across categories

Description

Get a table of all significant interactions across categories

Usage

get_multiOmics_diffNetworks(deggs_object, sig_threshold = 0.05)

Arguments

`deggs_object`	an object of class `deggs` generated by `get_diffNetworks`
`sig_threshold`	threshold for significance. Default 0.05.

Value

a list of multilayer networks (as edge tables), one per category.

Examples

data("synthetic_metadata")
data("synthetic_rnaseqData")
data("synthetic_proteomicData")
data("synthetic_OlinkData")
assayData_list <- list("RNAseq" = synthetic_rnaseqData,
                       "Proteomics" = synthetic_proteomicData,
                       "Olink" = synthetic_OlinkData)
deggs_object <- get_diffNetworks(assayData = assayData_list,
                                 metadata = synthetic_metadata,
                                 category_variable = "response",
                                 verbose = FALSE,
                                 show_progressBar = FALSE,
                                 cores = 2)
get_multiOmics_diffNetworks(deggs_object, sig_threshold = 0.05)

multiDEGGs documentation built on June 8, 2025, 1:19 p.m.