dataXXmirmeth: Contains R-object 'dataXXmirmeth'

In multiridge: Fast Cross-Validation for Multi-Penalty Ridge Regression

Contains R-object dataXXmirmeth

Description

This list object contains the binary response (control/case) and two data blocks corresponding to miRNA and methylation data

Usage

data(dataXXmirmeth)

Format

The format is a list with two components: resp: numeric (0/1) [1:43]\ XXmirmeth: list with 2 components, each a matrix [1:43,1:43]\

Details

The object XXmirmeth is created by applying createXXblocks(list(datamir,datameth)), where objects datamir and datameth are large data matrices stored in the mirmethdata.Rdata file, which is available from the link below.

Source

Snoek, B. C. et al. (2019), Genome-wide microRNA analysis of HPV-positive self-samples yields novel triage markers for early detection of cervical cancer, International Journal of Cancer 144(2), 372-379.

Verlaat, W. et al. (2018), Identification and validation of a 3-gene methylation classifier for hpv-based cervical screening on self-samples, Clinical Cancer Research 24(14), 3456-3464.

References

Mark A. van de Wiel, Mirrelijn van Nee, Armin Rauschenberger (2021). Fast cross-validation for multi-penalty high-dimensional ridge regression. J Comp Graph Stat

See Also

createXXblocks. Source data file is available from:
https://drive.google.com/open?id=1NUfeOtN8-KZ8A2HZzveG506nBwgW64e4

Examples

data(dataXXmirmeth)
resp <- dataXXmirmeth[[1]]
XXmirmeth <- dataXXmirmeth[[2]]

multiridge documentation built on June 13, 2022, 5:07 p.m.