simulated_data: Genotype and trait data with epistasis.
In mvMAPIT: Multivariate Genome Wide Marginal Epistasis Test
simulated_data R Documentation
Genotype and trait data with epistasis.
Description
A simulated dataset that has epistatic interactions.
Usage
simulated_data
Format
A named list with simulated data and simulation parameters:
- parameters
Tibble containing simulation parameters for each trait.
- trait
Matrix containing simulated data for 2 traits and 500 samples.
- genotype
Matrix containing simulated genotype with 500 samples and 1000 variables.
- additive
Tibble containing all variants with additive effects on the traits as well as the effect sizes.
- epistatic
Tibble containing all variants with epistatic effects on the traits as well as the effect sizes.
- interactions
Tibble containing all interactions, effect size, and trait they affect.
- snps.filtered
SNPs that were used in the simulations.
Source
data-raw/simulate_epistasis.R
mvMAPIT documentation built on Sept. 26, 2023, 9:07 a.m.
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| simulated_data | R Documentation |
Genotype and trait data with epistasis.
Description
A simulated dataset that has epistatic interactions.
Usage
simulated_data
Format
A named list with simulated data and simulation parameters:
- parameters
Tibble containing simulation parameters for each trait.
- trait
Matrix containing simulated data for 2 traits and 500 samples.
- genotype
Matrix containing simulated genotype with 500 samples and 1000 variables.
- additive
Tibble containing all variants with additive effects on the traits as well as the effect sizes.
- epistatic
Tibble containing all variants with epistatic effects on the traits as well as the effect sizes.
- interactions
Tibble containing all interactions, effect size, and trait they affect.
- snps.filtered
SNPs that were used in the simulations.
Source
data-raw/simulate_epistasis.R
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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