R/plot.manyglm.R

In mvabund: Statistical Methods for Analysing Multivariate Abundance Data

################################################################################
# PLOT.MANYLM, PLOT.MANYGLM:                                                   #
# Plot for evaluation of goodness of fit for lm.mvabund objects                #
################################################################################

plot.manyglm <- function(x,
  res.type="pit.norm",
  which = 1,
  caption = c("Residuals vs Fitted","Normal Q-Q", "Scale-Location", "Cook\'s distance"),
  overlay=TRUE,
  n.vars=Inf,
  var.subset=NULL,
  sub.caption = NULL, ... ) {
   default.plot.manyglm(x,
    res.type=res.type,
    which = which,
    caption = caption,
    overlay=overlay,
    n.vars=n.vars,
    var.subset=var.subset,
    sub.caption = sub.caption,
    ... )
   return(invisible())
}