| aic | Akaike Information Criterion |
| aiCI | Confidence Intervals for Variance Components |
| aiFun | Sampling (co)variances |
| constrainFun | Function used in conjunction with others to produce a profile... |
| drfx | Simulated design random effects |
| F2009 | Pedigree adapted from Fikse 2009 with genetic groups and... |
| FG90 | Pedigree, adapted from Table 1 in Fernando & Grossman (1990) |
| findDFC | Finds the double first cousins in a pedigree |
| founderLine | Identifies the matriline or patriline to which each... |
| genAssign | Generation assignment |
| geneDrop | Functions to conduct gene dropping through a pedigree |
| ggcontrib | Genetic group contribution |
| ggTutorial | Simulated dataset used to analyze data with genetic group... |
| grfx | Simulated genetic random effects |
| LRTest | log-Likelihood Ratio Test |
| makeA | Creates the additive genetic relationship matrix |
| makeAA | Creates the additive by additive epistatic genetic... |
| makeAinv | Creates the inverse additive genetic relationship matrix |
| makeAstarMult | Creates the inverse additive genetic relationship matrix with... |
| makeD | Create the dominance genetic relationship matrix |
| makeDomEpi | Creates the additive by dominance and dominance by dominance... |
| makeDsim | Create the dominance genetic relationship matrix through an... |
| makeM | Creates the (additive) mutational effects relationship matrix |
| makeMinv | Create the inverse (additive) mutational effects relationship... |
| makeS | Creates the additive genetic relationship matrix for the... |
| makeTinv | Creates components of the additive genetic relationship... |
| Mrode2 | Pedigree from Table 2.1 of Mrode (2005) |
| Mrode3 | Pedigree, from chapter 3 of Mrode (2005) with genetic groups... |
| Mrode9 | Pedigree, adapted from example 9.1 of Mrode (2005) |
| nadiv-deprecated | Deprecated functions in package 'nadiv'. |
| nadiv-package | (Non)Additive Genetic Relatedness Matrices in Animal Model... |
| numPed | Integer Format Pedigree |
| parConstrainFun | Function used in the 'proLik' function to produce a profile... |
| pcc | REML convergence checks |
| pin-deprecated | Approximate standard errors for linear functions of variance... |
| prepPed | Prepares a pedigree by sorting and adding 'founders' |
| proLik | Profile Likelihoods |
| prunePed | Prunes a pedigree based on individuals with phenotypes |
| Q1988 | Pedigree with genetic groups adapted from Quaas (1988)... |
| simGG | Genetic group pedigree and data simulation |
| simPedDFC | Double first cousin pedigree construction |
| simPedHS | Half-sib pedigree construction |
| simPedMCN | Middle Class Neighborhood pedigree construction |
| sm2list | Converts a sparse matrix into a three column format. |
| varTrans | Transforms ASReml-R gamma sampling variances to component... |
| warcolak | Pedigree and phenotypic values for a mythical population of... |
| Wray90 | Pedigree, adapted from Wray (1990) |
