F2009: Pedigree adapted from Fikse 2009 with genetic groups and...

In nadiv: (Non)Additive Genetic Relatedness Matrices

Pedigree adapted from Fikse 2009 with genetic groups and fuzzy classification

Description

Pedigree adapted from Fikse 2009 with genetic groups and fuzzy classification

Usage

F2009

Format

A data.frame with 16 observations on the following 11 variables:

id

a factor with levels indicating the unique individuals (including phantom parents) and genetic groups

dam

a factor of observed maternal identities

sire

a factor vector of observed paternal identities

damGG

a factor of maternal identities with genetic groups inserted instead of NA

sireGG

a factor of paternal identities with genetic groups inserted instead of NA

phantomDam

a factor of maternal identities with phantom parents inserted instead of NA

phantomSire

a factor of paternal identities with phantom parents inserted instead of NA

group

a factor of genetic groups to which each phantom parent belongs

g1

a numeric vector with probabilities of group g1 membership for each phantom parent

g2

a numeric vector with probabilities of group g2 membership for each phantom parent

g3

a numeric vector with probabilities of group g3 membership for each phantom parent

Source

Fikse, F. 2009. Fuzzy classification of phantom parent groups in an animal model. Genetics Selection Evolution 41:42.

Examples

  data(F2009)
  str(F2009)

nadiv documentation built on May 29, 2024, 10:40 a.m.