NEWS.md

In nandb: Number and Brightness Image Analysis

nandb 2.1.0

MINOR IMPROVEMENTS

• No more messages from ijtiff I/O.

BUG FIXES

• Insist on bug-fixed autothresholdr.

nandb 2.0.8

BUG FIXES

• Insist on bug-fixed filesstrings >= 3.2.
• Remove LazyData from DESCRIPTION (was causing CRAN note).

nandb 2.0.7

BUG FIXES

• Cope with ijtiff not working on 32-bit Windows.

nandb 2.0.6

BUG FIXES

• Fix a failing unit test.

nandb 2.0.5

BUG FIXES

• skip_on_cran() tests that allow for different C++ <random> implementations (doing these on Travis, AppVeyor and R-hub is enough).

nandb 2.0.4

BUG FIXES

• Exclude a test on CRAN oldrel.
• Insist on latest, bug-fixed ijtiff v2.0.2.

nandb 2.0.3

BUG FIXES

• Fix tests on CRAN Solaris and Windows oldrel.
• Insist on latest, bug-fixed filesstrings v3.1.5.

nandb 2.0.2

BUG FIXES

• Insist on new filesstrings. Old filesstrings was wreaking havoc on nandb due to its incompatibility with older versions of strex. See https://github.com/rorynolan/strex/issues/2.

nandb 2.0.1

BUG FIXES

• Require necessary versions of glue and filesstrings and newest, least buggy ijtiff, autothresholdr and detrendr.

nandb 2.0.0

MAJOR CHANGES

• Robin Hood detrending is now used instead of exponential smoothing detrending. This is a breaking change.

NEW FEATURES

• The timeseries functions now have the option to overlap for better time resolution.
• A pkgdown website!

nandb 1.1.0

NEW FEATURES

• matrix_raster_plot() is back. I thought it didn't really fit but a user said they missed when it was gone so it's back now.

nandb 1.0.1

BUG FIXES

• Fix issues on CRAN linux devel clang.

nandb 1.0.0

NEW FEATURES

• The package is now peer-reviewed and published in the journal Bioinformatics. See citation("nandb").
• The package style is now in accordance with the tidyverse style guide.
• brightness() and number() now include options to set offset, S-factor, readout_noise and gamma correction terms.
• brightness() and number() now enable calculation of both definitions ("B" and "epsilon"; "N" and "n") of brightness and number.
• Detrending is outsourced to the detrendr package. This new package makes detrending more accurate and much faster.
• TIFF I/O and graphics display() are now outsourced to the ijtiff package. This means R users no longer have to tell nandb how many channels are in the images.
• The package now has its own S3 class system.

BUG FIXES

• Kmer calculations are no longer possible. The way in which they were done was over-simple.

nandb 0.2.1

BUG FIXES

• Compatible with filesstrings 1.1.0.

nandb 0.2.0

• The first version that I consider CRAN-worthy.

nandb documentation built on May 17, 2021, 1:09 a.m.