grid_filter: Filter the occurrence with most confidence in species...
In naturaList: Classify Occurrences by Confidence Levels in the Species ID

grid_filter

R Documentation

Filter the occurrence with most confidence in species identification inside grid cells

Description

In each grid cell it selects the occurrence with the highest confidence level in species identification made by classify_occ function.

Usage

grid_filter(
  occ.cl,
  grid.resolution = c(0.5, 0.5),
  r = NULL,
  institution.code = "institutionCode",
  collection.code = "collectionCode",
  catalog.number = "catalogNumber",
  year = "year",
  date.identified = "dateIdentified",
  species = "species",
  identified.by = "identifiedBy",
  decimal.latitude = "decimalLatitude",
  decimal.longitude = "decimalLongitude",
  basis.of.record = "basisOfRecord",
  media.type = "mediaType",
  occurrence.id = "occurrenceID",
  institution.source,
  year.event,
  scientific.name,
  determined.by,
  latitude,
  longitude,
  basis.of.rec,
  occ.id
)

Arguments

`occ.cl`	data frame with occurrence records information already classified by `classify_occ` function.
`grid.resolution`	numeric vector with width and height of grid cell in decimal degrees.
`r`	raster from which the grid cell resolution is derived.
`institution.code`	column name of `occ.cl` with the name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record.
`collection.code`	column name of `occ.cl` with The name, acronym, code, or initials identifying the collection or data set from which the record was derived.
`catalog.number`	column name of `occ.cl` with an identifier (preferably unique) for the record within the data set or collection.
`year`	Column name of `occ.cl` the four-digit year in which the Event occurred, according to the Common Era Calendar.
`date.identified`	Column name of `occ.cl` with the date on which the subject was determined as representing the Taxon.
`species`	column name of `occ` with the species names.
`identified.by`	column name of `occ.cl` with the name of who determined the species.
`decimal.latitude`	column name of `occ.cl` latitude in decimal degrees.
`decimal.longitude`	column name of `occ.cl` longitude in decimal degrees.
`basis.of.record`	column name with the specific nature of the data record. See details.
`media.type`	column name of `occ.cl` with the media type of recording. See details.
`occurrence.id`	column name of `occ` with link or code for the occurrence record. See in Darwin Core Format
`institution.source`	deprecated, use `institution.code` instead.
`year.event`	deprecated, use `year` instead.
`scientific.name`	deprecated, use `species` instead.
`determined.by`	deprecated, use `identified.by` instead
`latitude`	deprecated, use `decimal.latitude` instead
`longitude`	deprecated, use `decimal.longitude` instead
`basis.of.rec`	deprecated, use `basis.of.record` instead.
`occ.id`	deprecated, use `occurrence.id` instead

Value

Data frame with the same columns of occ.cl.

Author(s)

Arthur V. Rodrigues

Examples


## Not run: 

data("A.setosa")
data("speciaLists")

occ.class <- classify_occ(A.setosa, speciaLists)
occ.grid <- grid_filter(occ.class)


## End(Not run)

naturaList documentation built on April 27, 2023, 5:09 p.m.