map_module: Check the occurrence records in a interactive map module

In naturaList: Classify Occurrences by Confidence Levels in the Species ID

Check the occurrence records in a interactive map module

Description

Allows to delete occurrence records and to select occurrence points by classification levels or by drawing spatial polygons.

Usage

map_module(
  occ.cl,
  action = "clean",
  institution.code = "institutionCode",
  collection.code = "collectionCode",
  catalog.number = "catalogNumber",
  year = "year",
  date.identified = "dateIdentified",
  species = "species",
  identified.by = "identifiedBy",
  decimal.latitude = "decimalLatitude",
  decimal.longitude = "decimalLongitude",
  basis.of.record = "basisOfRecord",
  media.type = "mediaType",
  occurrence.id = "occurrenceID",
  institution.source,
  year.event,
  scientific.name,
  determined.by,
  latitude,
  longitude,
  basis.of.rec,
  occ.id
)

Arguments

occ.cl	Data frame with occurrence records information already classified by classify_occ function.
action	a string with '"clean"' or '"flag"' which defines the action of 'map_module' function with the occurrence dataset. Default is '"clean"'. If the string is '"clean"' the dataset returned only the occurrences records selected by the user. If the string is '"flag"', a column named 'map_module_flag' is added in the output dataset, with tags 'selected' and 'deleted', following the choices of the user in the application.
institution.code	column name of occ with the name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record.
collection.code	column name of occ with The name, acronym, code, or initials identifying the collection or data set from which the record was derived.
catalog.number	column name of occ with an identifier (preferably unique) for the record within the data set or collection.
year	Column name of occ the four-digit year in which the Event occurred, according to the Common Era Calendar.
date.identified	Column name of occ with the date on which the subject was determined as representing the Taxon.
species	column name of occ with the species names.
identified.by	column name of occ with the name of who determined the species.
decimal.latitude	column name of occ latitude in decimal degrees.
decimal.longitude	column name of occ longitude in decimal degrees.
basis.of.record	column name with the specific nature of the data record. See details.
media.type	column name of occ with the media type of recording. See details.
occurrence.id	column name of occ with link or code for the occurrence record. See in Darwin Core Format
institution.source	deprecated, use institution.code instead.
year.event	deprecated, use year instead.
scientific.name	deprecated, use species instead.
determined.by	deprecated, use identified.by instead
latitude	deprecated, use decimal.latitude instead
longitude	deprecated, use decimal.longitude instead
basis.of.rec	deprecated, use basis.of.record instead.
occ.id	deprecated, use occurrence.id instead

Value

Data frame with the same columns of occ.cl.

Author(s)

Arthur V. Rodrigues

See Also

classify_occ

Examples

## Not run: 
data("A.setosa")
data("speciaLists")

occ.class <- classify_occ(A.setosa, speciaLists)
occ.selected <- map_module(occ.class)
occ.selected


## End(Not run)

naturaList documentation built on April 20, 2022, 5:11 p.m.