nbc4va: Bayes Classifier for Verbal Autopsy Data

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An implementation of the Naive Bayes Classifier (NBC) algorithm used for Verbal Autopsy (VA) built on code from Miasnikof et al (2015) <DOI:10.1186/s12916-015-0521-2>.

Author
Richard Wen <rwenite@gmail.com>
Date of publication
2016-07-11 08:44:53
Maintainer
Richard Wen <rwenite@gmail.com>
License
GPL-3
Version
1.0

View on CRAN

Man pages

csmf.nbc
Calculate predicted CSMFs from a NBC model
internalCheckNBC
Check arguments for nbc()
internalCheckNBCSummary
Check arguments for summary.nbc()
internalGetCauseMetrics
Calculate performance metrics table per cause
internalGetCSMFAcc
Calculate CSMF accuracy
internalGetCSMFMaxError
Calculate CSMF maximum error
internalGetMetrics
Calculate overall performance metrics
internalNBC
NBC algorithm source code
internalRoundFixedSum
Round values to whole numbers while preserving the sum
internalSubAsRest
Substitute values in a dataframe proportionally to all other...
nbc
Train a NBC model
nbc4va
Guide for the nbc4va package
nbc4vaData
Example of clean data in nbc4va
nbc4vaDataRaw
Example of unclean data in nbc4va
nbc4vaGUI
Web-based graphical user interface in nbc4va
nbc4vaHelp
Help functions in nbc4va
nbc4vaHelpAdvanced
Advanced usage in nbc4va
nbc4vaHelpBasic
Basic usage in nbc4va
nbc4vaHelpData
Training and testing specifications in nbc4va
nbc4vaHelpDev
Developer notes in nbc4va
nbc4vaHelpFunctions
Functions in nbc4va
nbc4vaHelpMethods
Methodology and implementation in nbc4va
nbc4vaIO
Run nbc4va using file input and output
ova2nbc
Translate open verbal autopsy arguments to train a NBC model
plot.nbc
Bar plot of top predicted causes from a NBC model
print.nbc_summary
Print top predicted causes from a NBC model
summary.nbc
Summarize a NBC model with metrics
topCOD.nbc
Cause of death predictions from a NBC model

Files in this package

nbc4va
nbc4va/inst
nbc4va/inst/nbc4vagui
nbc4va/inst/nbc4vagui/ui.R
nbc4va/inst/nbc4vagui/server.R
nbc4va/inst/nbc4vagui/www
nbc4va/inst/nbc4vagui/www/bootstrap.min.css
nbc4va/inst/nbc4vagui/www/nbc4vagui_info.html
nbc4va/inst/nbc4vagui/helpers.R
nbc4va/inst/nbc4vagui/settings.R
nbc4va/inst/CITATION
nbc4va/tests
nbc4va/tests/testthat.R
nbc4va/tests/testthat
nbc4va/tests/testthat/test_nbc4va.R
nbc4va/NAMESPACE
nbc4va/data
nbc4va/data/nbc4vaDataRaw.rda
nbc4va/data/nbc4vaData.rda
nbc4va/R
nbc4va/R/nbc4va.R
nbc4va/R/nbc4va_internal.R
nbc4va/R/nbc4va_help.R
nbc4va/R/nbc4va_utility.R
nbc4va/R/nbc4va_data.R
nbc4va/R/nbc4va_wrapper.R
nbc4va/R/nbc4va_main.R
nbc4va/R/nbc4va_validation.R
nbc4va/R/nbc4va_extra.R
nbc4va/MD5
nbc4va/DESCRIPTION
nbc4va/man
nbc4va/man/nbc4vaIO.Rd
nbc4va/man/internalCheckNBC.Rd
nbc4va/man/internalGetCSMFAcc.Rd
nbc4va/man/summary.nbc.Rd
nbc4va/man/figures
nbc4va/man/figures/nbcdatatestncex.png
nbc4va/man/figures/eqcsmfmaxerror.png
nbc4va/man/figures/eqcsmfaccuracy.png
nbc4va/man/figures/plotnbcex.png
nbc4va/man/figures/eqsensitivity.png
nbc4va/man/figures/eqpccc.png
nbc4va/man/figures/nbcdatatestex.png
nbc4va/man/figures/printnbcex.png
nbc4va/man/figures/nbcioex.png
nbc4va/man/figures/nbcguiex.png
nbc4va/man/figures/nbcdatatrainex.png
nbc4va/man/nbc4vaDataRaw.Rd
nbc4va/man/nbc4vaHelpBasic.Rd
nbc4va/man/nbc4va.Rd
nbc4va/man/internalCheckNBCSummary.Rd
nbc4va/man/internalRoundFixedSum.Rd
nbc4va/man/internalSubAsRest.Rd
nbc4va/man/csmf.nbc.Rd
nbc4va/man/nbc4vaGUI.Rd
nbc4va/man/nbc.Rd
nbc4va/man/topCOD.nbc.Rd
nbc4va/man/nbc4vaHelpAdvanced.Rd
nbc4va/man/internalNBC.Rd
nbc4va/man/nbc4vaHelpMethods.Rd
nbc4va/man/ova2nbc.Rd
nbc4va/man/nbc4vaHelpData.Rd
nbc4va/man/nbc4vaHelpDev.Rd
nbc4va/man/nbc4vaHelp.Rd
nbc4va/man/nbc4vaData.Rd
nbc4va/man/nbc4vaHelpFunctions.Rd
nbc4va/man/internalGetCSMFMaxError.Rd
nbc4va/man/print.nbc_summary.Rd
nbc4va/man/internalGetMetrics.Rd
nbc4va/man/plot.nbc.Rd
nbc4va/man/internalGetCauseMetrics.Rd