quantifier: quantifier

In nc: Named Capture to Data Tables

quantifier

Description

Create a group with a quantifier.

Usage

quantifier(...)

Arguments

...	Pattern(s) to be enclosed in a group, and a quantifier (last argument). A quantifier is character string: "?" for zero or one, "*?" for non-greedy zero or more, "+" for greedy one or more, etc.

Value

A pattern list.

Author(s)

Toby Dylan Hocking

Examples

## No need to use nc::quantifier when the pattern to be quantified
## is just a string literal.
digits <- "[0-9]+"

## nc::quantifier is useful when there is a sequence of patterns to
## be quantified, here an optional group with a dash (not captured)
## followed by some digits (captured in the chromEnd group).
str(optional.end <- nc::quantifier("-", chromEnd=digits, "?"))
str(optional.end <- list(list("-", chromEnd=digits), "?"))#same

## Use it as a sub-pattern for capturing genomic coordinates.
chr.pos.vec <- c(
  "chr10:213054000-213055000",
  "chrM:111000",
  "chr1:110-111 chr2:220-222") # two possible matches.
nc::capture_first_vec(
  chr.pos.vec,
  chrom="chr.*?",
  ":",
  chromStart=digits,
  optional.end)

## Another example which uses quantifier twice, for extracting code
## chunks from Rmd files.
vignette.Rmd <- system.file(
  "extdata", "vignette.Rmd", package="nc")
non.greedy.lines <- nc::quantifier(".*\n", "*?")
optional.name <- nc::quantifier(" ", name="[^,}]+", "?")
Rmd.dt <- nc::capture_all_str(
  vignette.Rmd,
  before=non.greedy.lines,
  "```\\{r",
  optional.name,
  parameters=".*",
  "\\}\n",
  code=non.greedy.lines,
  "```")
Rmd.dt[, chunk := 1:.N]
Rmd.dt[, .(chunk, name, parameters, some.code=substr(code, 1, 20))]

nc documentation built on Sept. 1, 2023, 1:07 a.m.