neat: Efficient Network Enrichment Analysis Test

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Includes functions and examples to compute NEAT, a network-based test for gene enrichment analysis (Signorelli, Vinciotti and Wit, 2016, <DOI:10.1186/s12859-016-1203-6>).

Author
Mirko Signorelli, Veronica Vinciotti and Ernst C. Wit
Date of publication
2016-09-07 08:49:09
Maintainer
Mirko Signorelli <m.signorelli@rug.nl>
License
GPL-3
Version
1.0
URLs

View on CRAN

Man pages

neat
Performs neat for lists of gene sets
neat-package
neat
networkmatrix
Creates a network matrix for 'neat'
plot.neat
Plot method of 'neat'
print.neat
Print method of 'neat'
summary.neat
Summary method of 'neat'
yeast
List collecting various yeast data (see 'description')

Files in this package

neat
neat/inst
neat/inst/CITATION
neat/inst/doc
neat/inst/doc/neat.html
neat/inst/doc/neat.Rmd
neat/inst/doc/neat.R
neat/NAMESPACE
neat/data
neat/data/yeast.RData
neat/data/datalist
neat/R
neat/R/neat.R
neat/vignettes
neat/vignettes/neat.Rmd
neat/MD5
neat/build
neat/build/vignette.rds
neat/DESCRIPTION
neat/man
neat/man/plot.neat.Rd
neat/man/summary.neat.Rd
neat/man/neat-package.Rd
neat/man/networkmatrix.Rd
neat/man/print.neat.Rd
neat/man/neat.Rd
neat/man/yeast.Rd