plot.neat | R Documentation |
neat
plot
method for class "neat
".
## S3 method for class 'neat'
plot(x, nbreaks = 10, ...)
x |
An object of class " |
nbreaks |
Number of breaks to be used in the histogram (default is 10) |
... |
Further arguments passed to or from other methods |
An histogram showing the distribution of p-values and a p-p plot comparing the distribution of p-values to the uniform distribution.
Mirko Signorelli
Signorelli, M., Vinciotti, V., Wit, E. C. (2016). NEAT: an efficient network enrichment analysis test. BMC Bioinformatics, 17:352. Url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1203-6.
neat
, print.neat
, summary.neat
## Not run:
data(yeast)
esr2 = list('ESR 2' = yeast$esr2)
test = neat(alist = esr2, blist = yeast$goslimproc, network = yeast$yeastnet,
nettype='undirected', nodes = yeast$ynetgenes, alpha = 0.01)
plot(test)
## End(Not run)
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