plot.neat: Plot method of 'neat'

In neat: Efficient Network Enrichment Analysis Test

Plot method of neat

Description

plot method for class "neat".

Usage

## S3 method for class 'neat'
plot(x, nbreaks = 10, ...)

Arguments

x	An object of class "neat"
nbreaks	Number of breaks to be used in the histogram (default is 10)
...	Further arguments passed to or from other methods

Value

An histogram showing the distribution of p-values and a p-p plot comparing the distribution of p-values to the uniform distribution.

Author(s)

Mirko Signorelli

References

Signorelli, M., Vinciotti, V., Wit, E. C. (2016). NEAT: an efficient network enrichment analysis test. BMC Bioinformatics, 17:352. Url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1203-6.

See Also

neat, print.neat, summary.neat

Examples

## Not run: 
data(yeast)
esr2 = list('ESR 2' = yeast$esr2)

test = neat(alist = esr2, blist = yeast$goslimproc, network = yeast$yeastnet, 
            nettype='undirected', nodes = yeast$ynetgenes, alpha = 0.01)

plot(test)

## End(Not run)

neat documentation built on June 22, 2024, 11:26 a.m.