Man pages for neotoma2
Working with the Neotoma Paleoecology Database
| add_chronology | Add a new chronology into an existing collectionunit. |
| as.data.frame | as.data.frame |
| author_classes | An S4 class for the authors of a Neotoma publication. |
| c | c - Combine 'neotoma2' objects |
| cash | cash |
| cash-set | cash-set |
| check_contacts | Check contact information for a record against Neotoma... |
| chroncontrols | chroncontrols |
| chroncontrols-site-method | Recover information about the chron controls for a... |
| chroncontrols-sites-method | Recover information about the chron controls for a... |
| chronologies | Obtain the chronology from a record or multiple records. |
| chronologies_classes | S4 class for 'chronologies' information |
| chronologies-collunit-method | Extract 'chronologies' from a 'site's or 'collunits' object. |
| cite_data | Generate a data citation from a Neotoma2 object. |
| cite_data-sites-method | Obtain data citations from multiple records. |
| clean | clean Neotoma objects to remove duplicates and empty objects. |
| collunits | Extract collection units from a sites object |
| collunits_classes | S4 class for collection units information. |
| collunits-sites-method | Extract 'collunits' from a 'sites' object. |
| contacts_classes | An S4 class for multi-contact information from the Neotoma... |
| coordinates | Obtain coordinates from a sites object. |
| coordinates-sites-method | Return the latitude and longitude of sites |
| datasets | Extract datasets from a sites object. |
| datasets_classes | S4 class for 'datasets' information |
| datasets-collunits-method | Extract 'datasets' from a 'sites' or 'collunits' object. |
| doi | Obtain the DOI for publications or datasets. |
| doi-sites-method | Obtain dataset DOIs from records. |
| filter | Apply a 'filter' for Neotoma sites objects. |
| get_contacts | Get 'contact' information for Neotoma contributors |
| get_datasets | get_datasets |
| get_documentation | get_documentation |
| get_downloads | get_downloads |
| getids | Get object IDs |
| get_manual | get_manual |
| get_params | get_params |
| get_publications | Get publication information for Neotoma records |
| get_sites | get_sites |
| get_speleothems | get_speleothems |
| get_stats | get_stats |
| get_table | Get table record from Neotoma |
| get_taxa | get_taxa |
| get_taxon | get_taxon |
| length | length |
| missingOrNULL-class | c Method - Combine objects, including NULL |
| names | Get a 'neotoma2' object's slot names |
| pingNeotoma | pingNeotoma |
| pipe | Pipe operator See 'magrittr::%>%' for details. |
| plot | Plot site coordinates using a basic plot. |
| plotLeaflet | plotLeaflet |
| plotLeaflet-sites-method | plotLeaflet |
| publications_classes | An S4 class for Neotoma 'publications'. |
| repositories_classes | S4 class for 'repository' information |
| samples | Obtain samples from a record or multiple records. |
| samples_classes | S4 class for 'samples' information |
| samples-sites-method | samples |
| set_chronology | set chronology information for a new record. |
| set_collunit | set Site Information for Fossil Sites |
| set_contact | Set contact information for a new record. |
| set_dataset | set Site Information for Fossil Sites |
| set_default | Set the default chronology within a collectionunit. |
| set_default-chronologies-method | Change the default age model for a record. |
| set_publication | Create a new publication (or publication set) |
| set_sample | set Sample Information |
| set_server | Set Neotoma API Source or Server |
| set_site | set Site Information for Fossil Sites |
| set_speleothem | Set Speleothem |
| show | Display a 'sites' object or nested slots. |
| sites_classes | An S4 class for 'sites' information |
| specimens_classes | S4 class for 'specimens' information |
| speleothemdetails | Obtain speleothems and samples from a record or multiple... |
| speleothemdetails-sites-method | speleothemdetails |
| speleothems | Obtain speleothems from a record or multiple records. |
| speleothems_classes | S4 class for 'speleothem' information |
| speleothems-sites-method | speleothems |
| sub | sub |
| subset | subset |
| sub-sub | sub-sub |
| sub-subset | sub-subset |
| summary-sites-method | Summary of objects within a sites object. |
| taxa | taxa |
| taxa_classes | S4 class for taxa information |
| taxa-sites-method | Extract taxonomic data from a set of sites. |
| toWide | toWide |
